Gene detail

Detail information of GWHGAAZE026170

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271970.1	0	PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Vitis vinifera]
COG	YP_007768743.1	2E-90	dTDP-glucose 4,6-dehydratase
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|F6H9H8\|F6H9H8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48871.1}
TAIR10	AT1G78570.1	0	rhamnose biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74779496	74782099	+
GWHAAZE00000007	mRNA	74779496	74782099	+
GWHAAZE00000007	exon	74779496	74781043	+
GWHAAZE00000007	exon	74781656	74782099	+
GWHAAZE00000007	CDS	74779496	74781043	+
GWHAAZE00000007	CDS	74781656	74782099	+

Transcript Sequence
>GWHTAAZE026204 ATGTCAAAAGAGGATGTTCCATCATATTCACCGAAAAACATCCTAATAACTGGTGCAGCCGGTTTCATTGCCTCCCATGTAACTAACCGTTTGATCAAAAAATACCCTGATTACAAGATCATAGCCCTCGATAAGCTAGACTATTGCTCCAGCCTCAAGAATCTACAGCCATGCTACACTTCTCCCAACTTCAAATTCGTCAAGGCCGATATTGCAAGTACTGATCTTATCACCTATTTGTTGGTCGTTGAGAAAATAGACACTATAATGCACTTTGCAGCTCAAACCCATGTCGATAATTCGTTTGGAAACTCAATTGCGTTCACCAATAATAACATATACGGTACCCATGTACTTTTAGAAGCTTGCAAGGTTACTAATCAAATTAGGAGGTTCATTCATGTTAGTACGGATGAAGTTTATGGTGAAACTGATTTGGAGACCGATATTGGCAATCCCGAGGCTTCTCAGCTTCTTCCTACTAATCCATATTCGGCCACTAAAGCCGGTGCAGAAATGTTGGTGATGGCTTATCACAGGTCTTACGGCTTACCAACGATCACTACACGTGGGAATAATGTTTATGGACCAAACCAGTTCCCCGAGAAGTTGATTCCTAAATTTATTTTACTGGCTATGGAAGGCAAAGATTTGCCTATTCATGGTGATGGTAGTAATGTGCGAAGCTACTTGTACTCTGACGACGTGGCGGAGGCTTTCGATGTTGTGCTTCATAAAGGGTCTATCGGTCATGTGTACAATATTGGTACGAAGAAAGAGAGGAGCGTCTCAGATGTAGCGTCTGATATTTGCAAATTGTTCAATTTGAATCCGAAAGATGTTATAAAGTTTGTTCATGATCGGCCTTTTAACGACAAGAGGTATTTTTTGGATGACCAAAAGCTTAAGAGGCTCGGTTGGGAAGAAAGAACACCTTGGGTTGAAGGGCTAAAAAAGACTATGGAATGGTACACTAAAAACTCCGATTGGTGGGGTGATGTGGCAGCGGCTCTTCACCCGCACCCGTTGTTCTCTTTGATCGTGCCTCCTAATAACGACTTGCACTTTTTGCATTACAATGTGAGCAGCGGTGACAACAGTGATGATAGCAGTAAAAAATGTGGGGGTGGGGGTTTGAAGTTTTTGATATATGGAAGGACCGGTTGGATTGGTGGGTTATTGGGAAATATTTGCAAGGAGAAAGGGATAAGTTTCGAGTATGGGAACGGGAGGCTTCAAGATAGAAAGTCGCTAATGGTGGATATAGGGAAAGTACAACCGACCCATGTTTTTAATGCGGCTGGGGTTACTGGGAGGCCGAATGTGGATTGGTGCGAGTCTCATAAGGTAGAAACGATTAGGACAAATGTTGTTGGTACGCTAACTTTGGCTGATGTGTGCAAGGAGAAAGGGATTTTGATGATGAACTTTGCGACTGGGTGTATATTTGAGTATGACAAGAGCCATCCTCAAGGGTCTGGTATTGGTTTCAAGGAGGATGAAAAACCAAACTTCACCGGGTCTTTTTACTCCAAAACAAAGGCTATGGTGGAGGAGCTATTGAAGAACTTCGACAATGTATGCACTCTAAGGGTTCGGATGCCAATATCATCAGATCTAAACAACCCTCGAAACTTTATCACAAAAATTAGTCGTTACGAGAAAGTGGTAAACATACCAAACAGCATGACGGTACTAGACGAGCTCTTGCCCATATCGATAGAGATGGCGAAAAGAAATTGTAGAGGAATATGGAACTTCACGAACCCGGGGGTGATAAGCCACAATGAAATATTGGAGTTTTACAAAGAATACATAGATCCAAAGTTTAAATGGGTGAATTTTGGTTTGGAAGAGCAAGCCAAAGTGATAGTTGCACAAAGGAGTAACAATGAGTTGGATGCTACAAAGTTGAAGAAGGAATTCCCTGAATTGTTGTCTATTAAGGATTCCATCATCAAGTATGTCTTCAAACCCAACAAGAGAACTTGA

Network for GWHGAAZE026170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	15	320	7.00E-67
PF04321.18	RmlD_sub_bind	380	552	2.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12450	RHM	Metabolic pathways	map01100
K12450	RHM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009225	biological_process	nucleotide-sugar metabolic process
GO:0008460	molecular_function	dTDP-glucose 4,6-dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.158
	SRR3591710	White floral bud	15.281
	SRR3591711	White flower	0.732
	SRR3591712	Green floral bud	39.149
	SRR3591713	Yellow flower	0.065
SRP173429	SRR8316895	Juvenile bud stage	15.350
	SRR8316896	Juvenile bud stage	44.342
	SRR8316897	Juvenile bud stage	19.160
	SRR8316894	Third green stage	15.130
	SRR8316900	Third green stage	45.270
	SRR8316901	Third green stage	54.590
	SRR8316898	Complete white stage	0.086
	SRR8316899	Complete white stage	0.078
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.060
	SRR8316904	Silver flowering stage	0.104
	SRR8316905	Silver flowering stage	0.079
	SRR8316906	Gold flowering stage	0.031
	SRR8316907	Gold flowering stage	0.051
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	14.146
	SRR6706287	Light intensity 50%	13.131
	SRR6706288	Light intensity 20%	12.137
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.456
	CNS0095593	Slightly white alabastrum(diploid) 2	24.128
	CNS0095594	Slightly white alabastrum(diploid) 3	47.210
	CNS0095595	Whole white alabastrum(diploid) 2	41.055
	CNS0095596	Whole white alabastrum(diploid) 3	54.182
	CNS0095597	Whole white alabastrum(diploid) 4	37.160
	CNS0095598	Silvery flower (diploied) 1	0.303
	CNS0095599	Silvery flower (diploied) 2	1.288
	CNS0095600	Silvery flower (diploied) 3	0.494
	CNS0095601	Golden flower (diploid) 1	0.228
	CNS0095602	Golden flower (diploid) 2	0.483
	CNS0095603	Golden flower (diploid) 3	0.240
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	70.463
	CNS0095608	Whole white alabastrum(tetraploid) 2	65.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.560
	CNS0095610	Silvery flower (tetraploid) 1	0.109
	CNS0095611	Silvery flower (tetraploid) 2	1.061
	CNS0095612	Silvery flower (tetraploid) 3	3.545
	CNS0095613	Golden flower (tetraploid) 1	0.046
	CNS0095614	Golden flower (tetraploid) 2	0.127
	CNS0095615	Golden flower (tetraploid) 3	0.808
CRA001975	CRR073297	Stem 1	13.680
	CRR073298	Stem 2	13.335
	CRR073299	Stem 3	7.759
	CRR073300	Leaf 1	16.442
	CRR073301	Leaf 2	14.496
	CRR073302	Leaf 3	10.723
	CRR073303	Juvenile bud 1	9.165
	CRR073304	Juvenile bud 2	6.993
	CRR073305	Juvenile bud 3	0.194
	CRR073306	Third green 1	2.780
	CRR073307	Third green 2	2.930
	CRR073308	Third green 3	2.824
	CRR073309	Second white 1	0.060
	CRR073310	Second white 2	0.204
	CRR073311	Second white 3	0.314
	CRR073312	Silver flowering 1	1.917
	CRR073313	Silver flowering 2	1.958
	CRR073314	Silver flowering 3	0.867
	CRR073315	Gold flowering 1	2.819
	CRR073316	Gold flowering 2	0.377
	CRR073317	Gold flowering 3	1.325
	CRR073318	Tawny withering 1	2.117
	CRR073319	Tawny withering 2	1.264
	CRR073320	Tawny withering 3	2.079