Gene detail

Detail information of GWHGAAZE026177

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AED99872.1	0	cytochrome P450 [Panax notoginseng]
COG	YP_007117231.1	3E-82	(+)-abscisic acid 8'-hydroxylase
Swissprot	tr\|I7CT85\|C7A53_PANGI	0	Protopanaxadiol 6-hydroxylase
trEMBL	tr\|F4YF76\|F4YF76_9APIA	0	Cytochrome P450 {ECO:0000313\|EMBL:AED99872.1}
TAIR10	AT5G36110.1	3E-128	cytochrome P450, family 716, subfamily A, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74902947	74904746	-
GWHAAZE00000007	mRNA	74902947	74904746	-
GWHAAZE00000007	exon	74902947	74903246	-
GWHAAZE00000007	exon	74903459	74903646	-
GWHAAZE00000007	exon	74903804	74904746	-
GWHAAZE00000007	CDS	74903804	74904746	-
GWHAAZE00000007	CDS	74903459	74903646	-
GWHAAZE00000007	CDS	74902947	74903246	-

Transcript Sequence
>GWHTAAZE026211 ATGGATGTCTTCCTCTCAATATCTCTCCTCTTTATTATACCATCCTTCCTCATTTTCTTCTTCTATAATAAACACAAAACCAACAACCCAAAACTCCCACCAGGCAAAACCGGATGGCCAGTCATCGGCGAAACACTCCAATTCGTCTCTACTGGCCGGTCCGGCCACCCCGAGAGATTTGTCAAAGAAAGAATGAAGAAATACTCACCGGAGATTTTCAAAACCTCCATCGCCGGTGAAACAATGGCAGTTCTTTGCGGACCTTCCGGCAACAAGTTCTTGTTCTCTAACGAAAACAAGCTAGTAGTTTCATGGTGGCCACCCACCATAGAGAAAATCATTAGCTCCTCTAACACATCCACAATAATTACTACCAAGAAAATGCGCAAAATTATCCCCGAATTTATCAAGCCCGAAGCGCTCCAAAAGTACGTGCCAATAATGGATTCTACTACAAGGAATGAAGTGAAGAAAGAATGGTGTAGCCCTAATAGAGAGGTCAAAGTTTTCCCTCTAGCGAAAAACTTGACCTTCTCTTTGTCTTGTAAGCTATTCCTGAGTGTTGAAGATCCCGGGCTTGTCACTAGGTTTGCTCATAATTTCGAGCTTGTAACCACGGGTCTACTTTCGGTGCCAATAAATTTACCAGGCACAGCTTTTAATCGTGCTATTAAGGCTGCGAACTCGCTTAGAGAAGAGCTTTCGCCTATTATAAAGCGGAAGAGAAATGATTTGTCCGAGAAGAGAGATGTAGCAACTTATGATTTGTTATCCAAGATTCTTATGTTCAGCGATGAGGATGGCAAGTTTCTAAATGAAATGGAGATTGCTGATATGATCTTGGGTATACTAATTGCAAGCCACGATACTACAAGCACAGTAATGACCTTTGTTGTCTATTATCTTGCCGATCATCCTGATGTCTATGCCAAAGTCCTTCAAGAACAAGTTGAGATTGCGAAATCGAAAGGGCCACAAGAGTTGTTAAGCTGGGAAGACGTACAAAAGATGAAGTATTCTCGTAACGTTATAAATGAAGTTTTGAGACTTGAACCTCCTTCTCAAGGAGCTTTCAAACATGCTATAAGCGACTTCACTTATGGAAACTTCTCAATTCCTAAGGGATGGAAGGCATTTTGGAGCGTGTATACGACGCACAAAGATCCAAAATATTTCCCAAATCCAGAGAAGTTTGATCCATCGAGGTTTGAAGGAAAAGGGCCAATACCTTTCACTTTTGTACCATTCGGAGGAGGACCAAGGATGTGCCCCGGGAACGAGTTTGCTCGTTTGGAAGTACTGATCTTTATGCATAGGCTGGTAACGAAATTCAAATGGGAGAAGCTAATTCCGAATGAAAAGATCGTATATGAACCATCGCCTATTCCTGTCAACGGACTTCCTATTAGGCTTTTCCCTCATCAAAATTAG

Network for GWHGAAZE026177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	33	448	7.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.244
	SRR3591706	second leaf	3.106
	SRR3591707	mature leaf	0.998
	SRR3591708	Shoot apex	2.005
	SRR3591709	Stem	0.217
	SRR3591710	White floral bud	5.522
	SRR3591711	White flower	5.502
	SRR3591712	Green floral bud	10.415
	SRR3591713	Yellow flower	1.970
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.212
	SRR8316897	Juvenile bud stage	0.063
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.062
	SRR8316901	Third green stage	0.524
	SRR8316898	Complete white stage	0.358
	SRR8316899	Complete white stage	0.136
	SRR8316903	Complete white stage	0.341
	SRR8316902	Silver flowering stage	0.189
	SRR8316904	Silver flowering stage	0.482
	SRR8316905	Silver flowering stage	0.230
	SRR8316906	Gold flowering stage	3.671
	SRR8316907	Gold flowering stage	0.467
	SRR8316908	Gold flowering stage	7.024
SRP132670	SRR6706286	Control	0.352
	SRR6706287	Light intensity 50%	0.172
	SRR6706288	Light intensity 20%	0.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.100
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.338
	CNS0095601	Golden flower (diploid) 1	0.898
	CNS0095602	Golden flower (diploid) 2	0.273
	CNS0095603	Golden flower (diploid) 3	0.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.111
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.039
	CNS0095610	Silvery flower (tetraploid) 1	0.347
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.213
	CNS0095613	Golden flower (tetraploid) 1	0.927
	CNS0095614	Golden flower (tetraploid) 2	1.293
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.093
	CRR073301	Leaf 2	0.052
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.173
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.337
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.693
	CRR073313	Silver flowering 2	0.785
	CRR073314	Silver flowering 3	0.408
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.075
	CRR073318	Tawny withering 1	0.210
	CRR073319	Tawny withering 2	1.794
	CRR073320	Tawny withering 3	0.000