Gene detail

Detail information of GWHGAAZE026182

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009363612.1	PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|Q03194\|PMA4_NICPL	Plasma membrane ATPase 4
trEMBL	tr\|B9N695\|B9N695_POPTR	H+-ATPase family protein {ECO:0000313\|EMBL:ERP59961.1}
TAIR10	AT2G24520.1	H(+)-ATPase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74993232	74999198	+
GWHAAZE00000007	mRNA	74993232	74999198	+
GWHAAZE00000007	exon	74993232	74993333	+
GWHAAZE00000007	exon	74993847	74993966	+
GWHAAZE00000007	exon	74994069	74994305	+
GWHAAZE00000007	exon	74994406	74995167	+
GWHAAZE00000007	exon	74995344	74995466	+
GWHAAZE00000007	exon	74995558	74995662	+
GWHAAZE00000007	exon	74995751	74995895	+
GWHAAZE00000007	exon	74996191	74996355	+
GWHAAZE00000007	exon	74996724	74996962	+
GWHAAZE00000007	exon	74997075	74997107	+
GWHAAZE00000007	exon	74997203	74997284	+
GWHAAZE00000007	exon	74997536	74997696	+
GWHAAZE00000007	exon	74997796	74997969	+
GWHAAZE00000007	exon	74998144	74998326	+
GWHAAZE00000007	exon	74998470	74998651	+
GWHAAZE00000007	exon	74999087	74999198	+
GWHAAZE00000007	CDS	74993232	74993333	+
GWHAAZE00000007	CDS	74993847	74993966	+
GWHAAZE00000007	CDS	74994069	74994305	+
GWHAAZE00000007	CDS	74994406	74995167	+
GWHAAZE00000007	CDS	74995344	74995466	+
GWHAAZE00000007	CDS	74995558	74995662	+
GWHAAZE00000007	CDS	74995751	74995895	+
GWHAAZE00000007	CDS	74996191	74996355	+
GWHAAZE00000007	CDS	74996724	74996962	+
GWHAAZE00000007	CDS	74997075	74997107	+
GWHAAZE00000007	CDS	74997203	74997284	+
GWHAAZE00000007	CDS	74997536	74997696	+
GWHAAZE00000007	CDS	74997796	74997969	+
GWHAAZE00000007	CDS	74998144	74998326	+
GWHAAZE00000007	CDS	74998470	74998651	+
GWHAAZE00000007	CDS	74999087	74999183	+
GWHAAZE00000007	three_prime_UTR	74999184	74999198	+

Transcript Sequence
>GWHTAAZE026216 ATGAGCTGCCAAGGTCTGAAGAGCTCGACTGATAAGGAGAGGATGACTAATGACGATTCTTGCCGCAGATCTGGATACTATTCACTTTATTTGAAACGGAACGAACGAATTCCTGTAGAGGAAGTCTTTGAGCAGTTGAAATGTAATGCAGAAGGCCTATCATCTGATGAAGGAGCCAACCGGCTTAATATTTTTGGACCAAACAAACTTGAGGAGAAGAAGGAAAGCAAGGTCCTCAAGTTTTTGGGCTTTATGTGGAACCCCCTATCGTGGGTAATGGAGGCAGCAGCCTTGATGGCTATTGCTCTAGCTAATGGTGATGGGAGGCCTCCTGATTGGCAGGATTTTGTTGGTATTGTCGTCTTATTGGTAATTAACTCTACAATAAGCTTTATTGAAGAAAACAGCGCTGGGAATGCGGCAGCAGCTCTTATGGCTGGGCTTGCCCCAAAAACAAAGGTTCTTCGAGACGGTAGATGGAGTGAGCAGGATGCATCTATCCTAGTTCCAGGGGATATCATAAGCATAAAACTGGGAGATATAATCCCTGCGGATGCTCGTCTTCTTGAGGGTGACCCACTGAAGGTTGATCAATCTGCTTTAACTGGAGAATCACTTGCCGTTACTAAGAACCCCTCAGATGAAGTATTCTCAGGTTCAACCTGTAAGCAGGGTGAAATTGAAGCAGTTGTTATTGCAACTGGGGTGCACACTTTCTTCGGTAAGGCTGCCCATTTAGTGGACAGCACCAACCAAGTAGGGCACTTCCAAAAGGTTCTAACTGCAATTGGTAACTTTTGCATTTGCTCAATTCTTGTTGGAATAATCATCGAGATTATTGTCATGTACCCCATACAACATCGCAAGTACAGGGACGGAATCGACAATTTACTGGTTCTCTTAATTGGAGGAATCCCAATTGCTATGCCAACTGTTTTATCTGTTACCATGGCTATTGGGTCTCACAGGCTGTCCGAGCAGGGTGCTATCACCAAAAGAATGACTGCTATTGAAGAAATGGCCGGTATGGACGTTCTTTGCAGTGACAAAACGGGGACACTGACACTGAACAAGCTTACAGTTGACAGAAACCTGATCGAAGTGTTTGTAAAGGGTTTGGAAAAAGAGCAGGTGATGCTGCTTGCTGCAAGGGCTTCAAGAACTGAGAATCAAGATGCCATTGATGCTGCCATTGTAGGAATGCTTGCTGATCCAAAGGAGGCAAGAGCTGGTATTAGGGAGGTCCATTTTCTTCCATTCAACCCCGTGGACAAGAGGACTGCTCTGACCTATATCGATTCTAATGGAAATTGGCATCGAGCAAGCAAAGGTGCCCCCGAGCAGATATTAACCCTCTGTAACTGCAAGGAGGATGTTAAAAGGAGAGTTCATTCTGTGATTGACAAATTCGCCGAACGTGGACTTCGATCTTTGGCTGTGGCTAGACAGGAAGTACCTGAGAAAACAAAAGATAGCCCCGGGGGACCATGGCAGCTTGTTGGTTTGTTACCTTTATTTGACCCTCCCAGGCATGATAGCGCCGAAACAATCAGAAGAGCTCTTCATTTGGGAGTTAACGTGAAGATGATTACAGGCGATCAACTCGCCATTGCAAAGGAAACTGGCCGCAGACTTGGAATGGGAACAAACATGTACCCTTCTTCTTCATTGCTCGGTCAAGACAAGGATGCATCCATTGCTGCCCTTCCTGTAGATGAATTGATTGAGAAAGCAGATGGTTTTGCTGGAGTATTCCCCGAGCACAAGTATGAAATTGTGAAGAGGTTGCAAGAGAGAAAGCACATATGTGGAATGACAGGAGATGGTGTCAATGATGCTCCTGCATTGAAGAAGGCAGACATTGGAATTGCTGTAGCCGATGCTACTGATGCCGCTAGAGGTGCTTCTGACATTGTTCTCACCGAACCTGGGCTTAGTGTAATTATAAGCGCAGTACTGACTAGCAGAGCTATTTTTCAAAGGATGAAAAACTACACTATCTATGCAGTTTCGATTACCATCCGTATTGTGTTCGGTTTCATGTTTATTGCCCTGATATGGAAGTTTGATTTTGCACCTTTTATGGTTCTTATTATTGCCATCCTAAATGATGGAACAATCATGACTATCTCGAAGGATAGGGTGAGACCTTCTCCAATGCCCGACAGTTGGAAACTAAAAGAGATTTTTGCTACTGGAATTGTGCTTGGAGGTTATTTGGCACTAATGACTGTGGTATTTTTCTGGCTTATGAAAGAGACCGACTTTTTATCGAATGCATTTAGTGTAAGATCGTTGAGAAACAGCCCTCCTGAAATGATGGCAACTCTGTACCTACAAGTGAGTATTGTTAGCCAGGCACTCATATTTGTTACAAGGTCTCGCAGCTGGTCCTTCGTTGAACGCCCTGGATATCTCTTACTCTTGGCTTTCTTAGTCGCTCAGCTGGTTGCCACATTAATAGCTGTATATGCCAACTGGGGTTTTGCGAAGATAGAAGGATGTGGTTGGGGGTGGGCTGGTGTCATTTGGCTCTACAGCATTATAACATATATTCCACTTGACATTCTCAAATTTGCCATCCGCTATGTTTTAAGTGGCAAGGCTTGGAATAATCTTTTGGAAAACAAGACTGCCTTCACTACAAAGTCCAACTATGGGAAAGAAGAGAGGGAGGCGCAGTGGGCTGCTGCACAGAGGACTCTACATGGGCTTCAACCACCAGAAACCACTAACCTATTCTCTGAAAAAAATAGTTATAGAGAGCTTTCAGAGATTGCTGAGCAAGCCAAGCGAAGGGCCGAGGTTGCAAGGCTCCGAGAGTTGCTTACGCTGAAAGGGCATGTGGAATCAGTCGTGAAGCTGAAAGGACTAGACATTGATACAATCCAACAGCATTATACGGTCTAATCTGATCAAAACAAA

Network for GWHGAAZE026182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	37	99	2.30E-13
PF00122.21	E1-E2_ATPase	149	326	1.50E-47
PF00702.27	Hydrolase	343	620	9.90E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.344
	SRR3591706	second leaf	36.208
	SRR3591707	mature leaf	119.104
	SRR3591708	Shoot apex	19.494
	SRR3591709	Stem	97.705
	SRR3591710	White floral bud	296.952
	SRR3591711	White flower	420.175
	SRR3591712	Green floral bud	124.036
	SRR3591713	Yellow flower	146.218
SRP173429	SRR8316895	Juvenile bud stage	37.663
	SRR8316896	Juvenile bud stage	45.389
	SRR8316897	Juvenile bud stage	13.986
	SRR8316894	Third green stage	18.486
	SRR8316900	Third green stage	40.224
	SRR8316901	Third green stage	45.308
	SRR8316898	Complete white stage	54.818
	SRR8316899	Complete white stage	130.969
	SRR8316903	Complete white stage	118.279
	SRR8316902	Silver flowering stage	66.115
	SRR8316904	Silver flowering stage	73.238
	SRR8316905	Silver flowering stage	15.007
	SRR8316906	Gold flowering stage	83.583
	SRR8316907	Gold flowering stage	139.419
	SRR8316908	Gold flowering stage	90.194
SRP132670	SRR6706286	Control	55.422
	SRR6706287	Light intensity 50%	50.970
	SRR6706288	Light intensity 20%	45.705
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.777
	CNS0095593	Slightly white alabastrum(diploid) 2	63.511
	CNS0095594	Slightly white alabastrum(diploid) 3	61.110
	CNS0095595	Whole white alabastrum(diploid) 2	56.206
	CNS0095596	Whole white alabastrum(diploid) 3	25.447
	CNS0095597	Whole white alabastrum(diploid) 4	54.389
	CNS0095598	Silvery flower (diploied) 1	80.171
	CNS0095599	Silvery flower (diploied) 2	111.992
	CNS0095600	Silvery flower (diploied) 3	135.244
	CNS0095601	Golden flower (diploid) 1	68.109
	CNS0095602	Golden flower (diploid) 2	99.469
	CNS0095603	Golden flower (diploid) 3	101.651
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.670
	CNS0095610	Silvery flower (tetraploid) 1	95.536
	CNS0095611	Silvery flower (tetraploid) 2	44.539
	CNS0095612	Silvery flower (tetraploid) 3	28.880
	CNS0095613	Golden flower (tetraploid) 1	38.950
	CNS0095614	Golden flower (tetraploid) 2	62.820
	CNS0095615	Golden flower (tetraploid) 3	34.999
CRA001975	CRR073297	Stem 1	46.135
	CRR073298	Stem 2	45.470
	CRR073299	Stem 3	48.761
	CRR073300	Leaf 1	71.598
	CRR073301	Leaf 2	64.347
	CRR073302	Leaf 3	54.495
	CRR073303	Juvenile bud 1	98.312
	CRR073304	Juvenile bud 2	69.605
	CRR073305	Juvenile bud 3	162.639
	CRR073306	Third green 1	30.240
	CRR073307	Third green 2	47.141
	CRR073308	Third green 3	52.995
	CRR073309	Second white 1	74.483
	CRR073310	Second white 2	85.002
	CRR073311	Second white 3	74.354
	CRR073312	Silver flowering 1	106.032
	CRR073313	Silver flowering 2	148.060
	CRR073314	Silver flowering 3	153.546
	CRR073315	Gold flowering 1	19.536
	CRR073316	Gold flowering 2	28.100
	CRR073317	Gold flowering 3	26.635
	CRR073318	Tawny withering 1	70.718
	CRR073319	Tawny withering 2	140.085
	CRR073320	Tawny withering 3	53.173