Gene detail

Detail information of GWHGAAZE026194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI20772.3	2.3571E-173	unnamed protein product [Vitis vinifera]
trEMBL	tr\|F6H3B4\|F6H3B4_VITVI	1E-169	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46651.1}
TAIR10	AT4G31420.1	2E-53	Zinc finger protein 622

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	75205487	75208740	+
GWHAAZE00000007	mRNA	75205487	75208740	+
GWHAAZE00000007	exon	75205487	75205630	+
GWHAAZE00000007	exon	75206806	75207148	+
GWHAAZE00000007	exon	75207265	75207398	+
GWHAAZE00000007	exon	75207494	75207663	+
GWHAAZE00000007	exon	75207815	75208033	+
GWHAAZE00000007	exon	75208266	75208740	+
GWHAAZE00000007	CDS	75205487	75205630	+
GWHAAZE00000007	CDS	75206806	75207148	+
GWHAAZE00000007	CDS	75207265	75207398	+
GWHAAZE00000007	CDS	75207494	75207663	+
GWHAAZE00000007	CDS	75207815	75208033	+
GWHAAZE00000007	CDS	75208266	75208428	+
GWHAAZE00000007	three_prime_UTR	75208429	75208740	+

Transcript Sequence
>GWHTAAZE026228 ATGGAGAGGGCAACAGCAGGAGCAGGAGCAGGAGCAGGAACAGGAGTATTAACCTGCAATTCCTGCAACAAAGAATTTGAGGACGCTTCTGAGCAGAAACTCCATTACAAGTCCGACTGGCACCGCTACAACCTCAAACGCAAGATTACTGGGGTTCCTGGAGTTACAGAAGCTCTGTTTTTAGCCAGGCAAGCCGCACTTGCTGAAGAGAAGAACAGGTTAAATGAGACCCCAATGTTGTATACTTGTGGTCTGTGTGGGAAAGGATATAGAAGCTCCAAGGCACATGCCCAACATCTCAAGTCACGAAGTCACATAGTGCGAGCTTCTCAAGGAACGAATAATGAGGATGAAGGGAGTGCGATAATTAAGCCACTCCCTCCACGTGAGGTGAAGAAGAAGCCTCCCCAACAACGGCGGGAAGAAAACGAAGAAAGCGATGAAAGTGATGAGTGGGAGGAAGTTGACGAAGATGACGACTTGCCTGGAGCATCGTTCTATAGAAAGCTGTATGGTTCACATGCACAAGCAGCATTGGTTCTTCATGCCCGATGTCGAGTATCTAAAAGATCCAAGAGGCCTTCTTACTTATCTTGGCCTCAAGGCAAGAACATACTACTTGTTAAAAGGGATTTCATGTGCTTGTACTGCAACGATGGATGTCATCCTTTCAGCAGTTTGGAAGCAGTTAGGAAGCATATGGTGGCAAAAAGTCATTGCAAAGTGCATTACGGTGATGGCGGTGATGAAGAAGAAGCTGAGTTGGAAGAGTTTTATGATTATAGCAGCAGTTATGTGGATGAGGAAGGGAAACAGCTGGTTACATCTGATGATATGAGCAATGCAGTTGAACTTGGAAGCGGTGGGTCGGAGCTCATCATAACTAGAAGAACAGATAATGGGAAATCAGTGAAATCACTTGGATCCAGGGAATATTTGCGTTATTACCGACAGAAACCGCGTCCTACACCTGCAAATGATATCGCTCTAACTCTTGCATTGGCCGCGAGGTATAGGAGCATGGGATTGGCTACAATACAGACCACGAGAAAGGATGCGGTGAGGATGAAGGTATTGAAGGAGATGAATAGAACAGGGGTGGAGGCCATGCGTTCCAAGATTGGCATGAAGAGCAATGTCATCCGCAACCTTCCCAAGAATGTCACCCATTAAACCTAACTAAAGTATGCCTATGGTCTTATTAATGTATTATTTTTATTTAGTTTTGTATTTGTCACTTCAAATTTGGATTTTTGTGCGTATACATGGTTTGTTTTTCAGTTAAACTTGGATGAGTAGTTGATTTAATCATGATTTGTGTGAAATTTTAGGTGGAATATGTAAAAGTTAAACATTAGACTCGGACGTGATTTTGAGTCGGTCTTTTCAGAAGGTTCATTGTTGTTATGCATACCTGTTATACTTGGAATTTGCGTGCCTTGTAGAAGAGCTGCAGTGCAAATCCTCAGTTGACAAGCTTAAAAA

Network for GWHGAAZE026194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12756.8	zf-C2H2_2	208	264	7.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.145
	SRR3591706	second leaf	44.194
	SRR3591707	mature leaf	66.613
	SRR3591708	Shoot apex	79.177
	SRR3591709	Stem	85.938
	SRR3591710	White floral bud	55.079
	SRR3591711	White flower	52.500
	SRR3591712	Green floral bud	52.419
	SRR3591713	Yellow flower	47.396
SRP173429	SRR8316895	Juvenile bud stage	30.857
	SRR8316896	Juvenile bud stage	45.077
	SRR8316897	Juvenile bud stage	20.662
	SRR8316894	Third green stage	18.215
	SRR8316900	Third green stage	50.468
	SRR8316901	Third green stage	52.622
	SRR8316898	Complete white stage	20.504
	SRR8316899	Complete white stage	88.532
	SRR8316903	Complete white stage	34.694
	SRR8316902	Silver flowering stage	23.283
	SRR8316904	Silver flowering stage	26.708
	SRR8316905	Silver flowering stage	15.826
	SRR8316906	Gold flowering stage	55.619
	SRR8316907	Gold flowering stage	49.261
	SRR8316908	Gold flowering stage	46.399
SRP132670	SRR6706286	Control	71.161
	SRR6706287	Light intensity 50%	70.087
	SRR6706288	Light intensity 20%	72.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.810
	CNS0095593	Slightly white alabastrum(diploid) 2	61.312
	CNS0095594	Slightly white alabastrum(diploid) 3	64.181
	CNS0095595	Whole white alabastrum(diploid) 2	54.101
	CNS0095596	Whole white alabastrum(diploid) 3	47.000
	CNS0095597	Whole white alabastrum(diploid) 4	58.464
	CNS0095598	Silvery flower (diploied) 1	69.084
	CNS0095599	Silvery flower (diploied) 2	59.044
	CNS0095600	Silvery flower (diploied) 3	54.994
	CNS0095601	Golden flower (diploid) 1	70.163
	CNS0095602	Golden flower (diploid) 2	65.736
	CNS0095603	Golden flower (diploid) 3	66.648
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.737
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.502
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.694
	CNS0095610	Silvery flower (tetraploid) 1	46.307
	CNS0095611	Silvery flower (tetraploid) 2	51.871
	CNS0095612	Silvery flower (tetraploid) 3	29.872
	CNS0095613	Golden flower (tetraploid) 1	39.456
	CNS0095614	Golden flower (tetraploid) 2	47.372
	CNS0095615	Golden flower (tetraploid) 3	40.590
CRA001975	CRR073297	Stem 1	65.683
	CRR073298	Stem 2	64.065
	CRR073299	Stem 3	58.872
	CRR073300	Leaf 1	83.122
	CRR073301	Leaf 2	79.205
	CRR073302	Leaf 3	61.279
	CRR073303	Juvenile bud 1	64.395
	CRR073304	Juvenile bud 2	55.478
	CRR073305	Juvenile bud 3	79.705
	CRR073306	Third green 1	37.108
	CRR073307	Third green 2	39.213
	CRR073308	Third green 3	36.253
	CRR073309	Second white 1	33.059
	CRR073310	Second white 2	39.618
	CRR073311	Second white 3	32.792
	CRR073312	Silver flowering 1	33.639
	CRR073313	Silver flowering 2	37.187
	CRR073314	Silver flowering 3	27.808
	CRR073315	Gold flowering 1	25.891
	CRR073316	Gold flowering 2	30.416
	CRR073317	Gold flowering 3	25.375
	CRR073318	Tawny withering 1	55.632
	CRR073319	Tawny withering 2	55.432
	CRR073320	Tawny withering 3	50.499