Detail information of GWHGAAZE026195


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007011581.11.6873E-153Uncharacterized protein isoform 2 [Theobroma cacao]
trEMBLtr|A0A061GH96|A0A061GH96_THECC6E-154Uncharacterized protein isoform 2 {ECO:0000313|EMBL:EOY29200.1}
TAIR10AT4G31410.25E-94Protein of unknown function (DUF1644)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7521656475217463-
GWHAAZE00000007mRNA7521656475217463-
GWHAAZE00000007exon7521728675217463-
GWHAAZE00000007exon7521656475217246-
GWHAAZE00000007CDS7521728675217463-
GWHAAZE00000007CDS7521656475217246-
Transcript Sequence

Network for GWHGAAZE026195

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07800.13DUF1644111591.30E-59
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.014
SRR3591706second leaf9.827
SRR3591707mature leaf12.947
SRR3591708Shoot apex11.655
SRR3591709Stem21.017
SRR3591710White floral bud19.826
SRR3591711White flower23.636
SRR3591712Green floral bud14.513
SRR3591713Yellow flower24.378
SRP173429 SRR8316895Juvenile bud stage 11.537
SRR8316896Juvenile bud stage 14.152
SRR8316897Juvenile bud stage 6.369
SRR8316894Third green stage 5.726
SRR8316900Third green stage 12.523
SRR8316901Third green stage 12.848
SRR8316898Complete white stage 7.495
SRR8316899Complete white stage 24.671
SRR8316903Complete white stage 13.584
SRR8316902Silver flowering stage12.812
SRR8316904Silver flowering stage16.000
SRR8316905Silver flowering stage8.326
SRR8316906Gold flowering stage 30.655
SRR8316907Gold flowering stage 30.345
SRR8316908Gold flowering stage 33.474
SRP132670SRR6706286Control11.459
SRR6706287Light intensity 50%11.380
SRR6706288Light intensity 20%11.330
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.635
CNS0095593Slightly white alabastrum(diploid) 210.265
CNS0095594Slightly white alabastrum(diploid) 310.107
CNS0095595Whole white alabastrum(diploid) 28.484
CNS0095596Whole white alabastrum(diploid) 36.131
CNS0095597Whole white alabastrum(diploid) 410.195
CNS0095598Silvery flower (diploied) 114.938
CNS0095599Silvery flower (diploied) 211.976
CNS0095600Silvery flower (diploied) 318.481
CNS0095601Golden flower (diploid) 113.247
CNS0095602Golden flower (diploid) 220.441
CNS0095603Golden flower (diploid) 323.270
CNS0095604Slightly white alabastrum(tetraploid) 110.851
CNS0095605Slightly white alabastrum(tetraploid) 28.881
CNS0095606Slightly white alabastrum(tetraploid) 315.124
CNS0095607Whole white alabastrum(tetraploid) 18.408
CNS0095608Whole white alabastrum(tetraploid) 27.215
CNS0095609Whole white alabastrum(tetraploid) 311.217
CNS0095610Silvery flower (tetraploid) 122.030
CNS0095611Silvery flower (tetraploid) 219.739
CNS0095612Silvery flower (tetraploid) 319.519
CNS0095613Golden flower (tetraploid) 117.952
CNS0095614Golden flower (tetraploid) 220.481
CNS0095615Golden flower (tetraploid) 322.691
CRA001975CRR073297Stem 119.233
CRR073298Stem 217.259
CRR073299Stem 314.509
CRR073300Leaf 119.472
CRR073301Leaf 221.706
CRR073302Leaf 313.502
CRR073303Juvenile bud 121.188
CRR073304Juvenile bud 214.471
CRR073305Juvenile bud 320.491
CRR073306Third green 113.409
CRR073307Third green 211.232
CRR073308Third green 310.402
CRR073309Second white 116.859
CRR073310Second white 215.754
CRR073311Second white 316.593
CRR073312Silver flowering 116.684
CRR073313Silver flowering 219.913
CRR073314Silver flowering 313.752
CRR073315Gold flowering 116.306
CRR073316Gold flowering 218.569
CRR073317Gold flowering 314.425
CRR073318Tawny withering 118.008
CRR073319Tawny withering 217.756
CRR073320Tawny withering 324.905