Gene detail

Detail information of GWHGAAZE026204

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010112142.1	1.0053E-141	hypothetical protein L484_019881 [Morus notabilis]
COG	YP_007141488.1	6E-28	hypothetical protein Cri9333_1065
Swissprot	tr\|O23461\|ARAK_ARATH	1E-136	L-arabinokinase
trEMBL	tr\|W9SHV6\|W9SHV6_9ROSA	4E-142	Uncharacterized protein {ECO:0000313\|EMBL:EXC32767.1}
TAIR10	AT4G16130.1	5E-116	arabinose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	75376881	75381705	+
GWHAAZE00000007	mRNA	75376881	75381705	+
GWHAAZE00000007	exon	75376881	75377028	+
GWHAAZE00000007	exon	75377836	75377943	+
GWHAAZE00000007	exon	75378379	75378447	+
GWHAAZE00000007	exon	75378868	75378951	+
GWHAAZE00000007	exon	75379108	75379184	+
GWHAAZE00000007	exon	75380882	75380948	+
GWHAAZE00000007	exon	75381268	75381325	+
GWHAAZE00000007	exon	75381470	75381537	+
GWHAAZE00000007	exon	75381631	75381705	+
GWHAAZE00000007	five_prime_UTR	75376881	75376890	+
GWHAAZE00000007	CDS	75376891	75377028	+
GWHAAZE00000007	CDS	75377836	75377943	+
GWHAAZE00000007	CDS	75378379	75378447	+
GWHAAZE00000007	CDS	75378868	75378951	+
GWHAAZE00000007	CDS	75379108	75379184	+
GWHAAZE00000007	CDS	75380882	75380948	+
GWHAAZE00000007	CDS	75381268	75381325	+
GWHAAZE00000007	CDS	75381470	75381537	+
GWHAAZE00000007	CDS	75381631	75381705	+

Transcript Sequence
>GWHTAAZE026238 ATTGAGGGAGATGGAAGAGGAGGCGATTATTATTGATTCAACAACTGCAAGTAAGATGATCATGAGCAACCCTTCTCCTCCTCCAACTCTGGTCTTTGCTTATTATGTTACAGGTCATGGCTTTGGTCATGCTACTCGTGTTGTTGAGGTTGTTCGACACCTCATTCTTGCTGGCCATTATGTTCATGTGGTCACTGGTGCACCTGACTTCGTCTTTACGAGTGAAGTACAGTCTCCCCGACTCTTCCTTCGCAAGGTACTGCTGGACTGTGGAGCCGTTCAAGCAGATGCTTTAACAGTGGATCGCCTTGCCTCTTTAGAGAAGTATTCGGAGACAGCTGTAGCACCCCGTGCTTCTATTTTGGCAACAGAAGTAGAGTGGCTGAAATTAATCAAGGCAGACTTAGTGGTTTCCGATGTTGTTCCAGTCGCTTGTCGGGCAGCAGCTGATGCTGGAATTCGCTCTGTTTGTGTTACCAACTTCAGTTGGGATTTCATCTACGCAGAATATGTGATGGCTGCTGGATATCATAATCGGTCTATAGTTTGGCAGATTGCAGAGGATTATTCGCACTGTGAATTCCTAATCCGCCTCCCAGGATATTGCCCAATGCCTGCTTTCCGCGATGTGATTGATGTACCTTTAGTTGTGAGGAGGTTGCATAAATCACGTGAGGAGGTGAGGAGGGAGCTTGGAATCGGAGATGATGTGAAGCTTGTTATCCTCAATTTTGGTGGACAAGTGAGTTATTGA

Network for GWHGAAZE026204

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12446	E2.7.1.46	Metabolic pathways	map01100
K12446	E2.7.1.46	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.010
	SRR3591706	second leaf	6.942
	SRR3591707	mature leaf	10.595
	SRR3591708	Shoot apex	4.755
	SRR3591709	Stem	10.288
	SRR3591710	White floral bud	11.970
	SRR3591711	White flower	13.990
	SRR3591712	Green floral bud	6.122
	SRR3591713	Yellow flower	23.665
SRP173429	SRR8316895	Juvenile bud stage	7.926
	SRR8316896	Juvenile bud stage	10.528
	SRR8316897	Juvenile bud stage	4.052
	SRR8316894	Third green stage	3.089
	SRR8316900	Third green stage	8.205
	SRR8316901	Third green stage	10.249
	SRR8316898	Complete white stage	7.095
	SRR8316899	Complete white stage	11.998
	SRR8316903	Complete white stage	10.133
	SRR8316902	Silver flowering stage	6.878
	SRR8316904	Silver flowering stage	12.628
	SRR8316905	Silver flowering stage	4.872
	SRR8316906	Gold flowering stage	14.000
	SRR8316907	Gold flowering stage	12.877
	SRR8316908	Gold flowering stage	12.981
SRP132670	SRR6706286	Control	11.846
	SRR6706287	Light intensity 50%	12.266
	SRR6706288	Light intensity 20%	12.478
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.142
	CNS0095593	Slightly white alabastrum(diploid) 2	2.314
	CNS0095594	Slightly white alabastrum(diploid) 3	2.630
	CNS0095595	Whole white alabastrum(diploid) 2	3.322
	CNS0095596	Whole white alabastrum(diploid) 3	1.779
	CNS0095597	Whole white alabastrum(diploid) 4	4.670
	CNS0095598	Silvery flower (diploied) 1	8.665
	CNS0095599	Silvery flower (diploied) 2	6.535
	CNS0095600	Silvery flower (diploied) 3	31.871
	CNS0095601	Golden flower (diploid) 1	7.528
	CNS0095602	Golden flower (diploid) 2	27.302
	CNS0095603	Golden flower (diploid) 3	29.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.203
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.730
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.801
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.271
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.160
	CNS0095610	Silvery flower (tetraploid) 1	30.836
	CNS0095611	Silvery flower (tetraploid) 2	36.008
	CNS0095612	Silvery flower (tetraploid) 3	24.769
	CNS0095613	Golden flower (tetraploid) 1	13.028
	CNS0095614	Golden flower (tetraploid) 2	22.725
	CNS0095615	Golden flower (tetraploid) 3	38.991
CRA001975	CRR073297	Stem 1	17.834
	CRR073298	Stem 2	13.731
	CRR073299	Stem 3	12.624
	CRR073300	Leaf 1	15.548
	CRR073301	Leaf 2	9.472
	CRR073302	Leaf 3	8.931
	CRR073303	Juvenile bud 1	7.087
	CRR073304	Juvenile bud 2	10.668
	CRR073305	Juvenile bud 3	14.050
	CRR073306	Third green 1	6.127
	CRR073307	Third green 2	4.701
	CRR073308	Third green 3	7.890
	CRR073309	Second white 1	13.320
	CRR073310	Second white 2	9.779
	CRR073311	Second white 3	13.294
	CRR073312	Silver flowering 1	6.570
	CRR073313	Silver flowering 2	5.809
	CRR073314	Silver flowering 3	8.930
	CRR073315	Gold flowering 1	6.093
	CRR073316	Gold flowering 2	13.675
	CRR073317	Gold flowering 3	11.011
	CRR073318	Tawny withering 1	6.745
	CRR073319	Tawny withering 2	4.470
	CRR073320	Tawny withering 3	4.104