Gene detail

Detail information of GWHGAAZE026211

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009612838.1	1.7125E-171	PREDICTED: L-arabinokinase-like isoform X1 [Nicotiana tomentosiformis]
COG	YP_003323924.1	4E-77	GHMP kinase
Swissprot	tr\|O23461\|ARAK_ARATH	3E-152	L-arabinokinase
trEMBL	tr\|D2D338\|D2D338_GOSHI	3E-171	Arabinose kinase {ECO:0000313\|EMBL:ACJ11758.1} (Fragment)
TAIR10	AT4G16130.1	4E-114	arabinose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	75437051	75452698	+
GWHAAZE00000007	mRNA	75437051	75452698	+
GWHAAZE00000007	exon	75437051	75437266	+
GWHAAZE00000007	exon	75438606	75438701	+
GWHAAZE00000007	exon	75438806	75438882	+
GWHAAZE00000007	exon	75447391	75447579	+
GWHAAZE00000007	exon	75450038	75450203	+
GWHAAZE00000007	exon	75450985	75451056	+
GWHAAZE00000007	exon	75451447	75451650	+
GWHAAZE00000007	exon	75452573	75452698	+
GWHAAZE00000007	five_prime_UTR	75437051	75437266	+
GWHAAZE00000007	five_prime_UTR	75438606	75438641	+
GWHAAZE00000007	CDS	75438642	75438701	+
GWHAAZE00000007	CDS	75438806	75438882	+
GWHAAZE00000007	CDS	75447391	75447579	+
GWHAAZE00000007	CDS	75450038	75450203	+
GWHAAZE00000007	CDS	75450985	75451056	+
GWHAAZE00000007	CDS	75451447	75451650	+
GWHAAZE00000007	CDS	75452573	75452698	+

Transcript Sequence
>GWHTAAZE026245 CCTGTTCATTCATGGGATGACATTTGAATTTTTGTGCAACTGCCACCTTTTTGAGTTATGAAAAAAGTTTAGTCTAATATGAAAGAAAACTTATTTTCCTACAATCACATACTACTATCGATCATGTAAACTGTAGAAATAATTGTGGTGTGCCTTCATCAATGATCTGCAGGACTTGATATCAGCCCAAGAGAGCTGGCTTTGCTCTGCCAAAAGGTAGAGAACAATATTGTCGGAGCTCCATGTGGTGTGATGGATCAGATGACTTCAGCATGTGGTGAAGCCAATCAACTCCTTGCAATGGTTTGCCAGCCTGCTGAGGTACTAGGCCTTGTAGAAATCCCCGGTCATATTCGATTTTGGGGAATTGATTCTGGATTACGGCACAGTATTGGAGGTGCAGATTATGGATCTGTGAGAGTAGGAGCCTTTATGGGTCGGAAAATCATCAAGTCTACTGCATCTGCAATGATGTCAAGTGCTAATGGGATGAACCCTGATGAATTGGAGGATAACTGTGTTGAAATGCTTGAAGCTGAAGCTTCATTAGATTACTTGTGCAATGTTGCACCTCACAGATATGAAGCTCTTTATGTTAAGATGCTTCCCGAGTCTATGCCTGGCGAGAAATTTTTGGCGAAATATACTGATCACAATGATCTTGTCACTGTCGTTGATAACAAGCGTAGTTATGGAGTAAGAGCAGCTGCTAGACACCCTATATATGAGAATTTCCGCGTGAAGGCATTCAAAGCATTATTAACATCTATGATGTCAGACGAGCAACTCACCGCTCTCGGAGAACTAATGTATCAGTGCCACTGCAGTTACAGTGCTTGTGGACTTGGATCGGATGGAACAGATAGGCTTGTCCAATTAGTGCAGGAAATGCAACATAGAAAAATCTCAAAATCTGGAGAAGGAAGTTTATATGGAGCCAAGATTACTGGCGGTGGATGCGGTGGAACAGTTTGTGTCATTGGAAAGAATTGTGTACGGAGCACAGAACAAATTCTTCAGATTCAACAGAGATACCAAGATGCCACAGGCTATCTGCCATTTGTTTTCGAGGGTTCATCGCCAGGTGCAGGAAAGTTTGGGTATCTAAGAATTCGTCGCCGCCGGCTCTCTCTCTCGCCCAATTAA

Network for GWHGAAZE026211

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08544.14	GHMP_kinases_C	171	259	1.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12446	E2.7.1.46	Metabolic pathways	map01100
K12446	E2.7.1.46	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.849
	SRR3591706	second leaf	10.421
	SRR3591707	mature leaf	14.033
	SRR3591708	Shoot apex	9.396
	SRR3591709	Stem	17.665
	SRR3591710	White floral bud	13.029
	SRR3591711	White flower	20.782
	SRR3591712	Green floral bud	11.493
	SRR3591713	Yellow flower	24.938
SRP173429	SRR8316895	Juvenile bud stage	11.313
	SRR8316896	Juvenile bud stage	16.647
	SRR8316897	Juvenile bud stage	5.327
	SRR8316894	Third green stage	5.749
	SRR8316900	Third green stage	13.490
	SRR8316901	Third green stage	13.510
	SRR8316898	Complete white stage	7.417
	SRR8316899	Complete white stage	18.119
	SRR8316903	Complete white stage	12.752
	SRR8316902	Silver flowering stage	9.252
	SRR8316904	Silver flowering stage	12.892
	SRR8316905	Silver flowering stage	7.534
	SRR8316906	Gold flowering stage	21.639
	SRR8316907	Gold flowering stage	22.079
	SRR8316908	Gold flowering stage	19.557
SRP132670	SRR6706286	Control	15.522
	SRR6706287	Light intensity 50%	14.182
	SRR6706288	Light intensity 20%	13.878
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.009
	CNS0095593	Slightly white alabastrum(diploid) 2	8.939
	CNS0095594	Slightly white alabastrum(diploid) 3	9.218
	CNS0095595	Whole white alabastrum(diploid) 2	9.283
	CNS0095596	Whole white alabastrum(diploid) 3	8.720
	CNS0095597	Whole white alabastrum(diploid) 4	9.908
	CNS0095598	Silvery flower (diploied) 1	18.327
	CNS0095599	Silvery flower (diploied) 2	14.862
	CNS0095600	Silvery flower (diploied) 3	30.797
	CNS0095601	Golden flower (diploid) 1	25.348
	CNS0095602	Golden flower (diploid) 2	28.492
	CNS0095603	Golden flower (diploid) 3	26.614
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.269
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.478
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.051
	CNS0095610	Silvery flower (tetraploid) 1	28.066
	CNS0095611	Silvery flower (tetraploid) 2	36.811
	CNS0095612	Silvery flower (tetraploid) 3	29.944
	CNS0095613	Golden flower (tetraploid) 1	29.983
	CNS0095614	Golden flower (tetraploid) 2	31.283
	CNS0095615	Golden flower (tetraploid) 3	33.560
CRA001975	CRR073297	Stem 1	22.564
	CRR073298	Stem 2	21.268
	CRR073299	Stem 3	14.192
	CRR073300	Leaf 1	16.473
	CRR073301	Leaf 2	16.025
	CRR073302	Leaf 3	10.902
	CRR073303	Juvenile bud 1	22.750
	CRR073304	Juvenile bud 2	11.550
	CRR073305	Juvenile bud 3	19.754
	CRR073306	Third green 1	7.843
	CRR073307	Third green 2	5.445
	CRR073308	Third green 3	5.456
	CRR073309	Second white 1	15.333
	CRR073310	Second white 2	10.675
	CRR073311	Second white 3	13.095
	CRR073312	Silver flowering 1	10.332
	CRR073313	Silver flowering 2	12.085
	CRR073314	Silver flowering 3	13.863
	CRR073315	Gold flowering 1	13.296
	CRR073316	Gold flowering 2	21.688
	CRR073317	Gold flowering 3	10.390
	CRR073318	Tawny withering 1	10.729
	CRR073319	Tawny withering 2	15.067
	CRR073320	Tawny withering 3	11.525