Detail information of GWHGAAZE026212


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009631825.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 [Nicotiana tomentosiformis]
Swissprottr|A2XDG4|UBP26_ORYSI0Ubiquitin carboxyl-terminal hydrolase 26
trEMBLtr|A0A068UX15|A0A068UX15_COFCA0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10AT3G49600.10ubiquitin-specific protease 26

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7547621375499888-
GWHAAZE00000007mRNA7547621375499888-
GWHAAZE00000007exon7549980075499888-
GWHAAZE00000007exon7549898675499582-
GWHAAZE00000007exon7549473975494994-
GWHAAZE00000007exon7549230975493075-
GWHAAZE00000007exon7549198475492092-
GWHAAZE00000007exon7549104975491230-
GWHAAZE00000007exon7548227775482561-
GWHAAZE00000007exon7548198675482190-
GWHAAZE00000007exon7548169475481765-
GWHAAZE00000007exon7548123775481464-
GWHAAZE00000007exon7547918075479443-
GWHAAZE00000007exon7547843875478579-
GWHAAZE00000007exon7547621375476292-
GWHAAZE00000007CDS7549980075499888-
GWHAAZE00000007CDS7549898675499582-
GWHAAZE00000007CDS7549473975494994-
GWHAAZE00000007CDS7549230975493075-
GWHAAZE00000007CDS7549198475492092-
GWHAAZE00000007CDS7549104975491230-
GWHAAZE00000007CDS7548227775482561-
GWHAAZE00000007CDS7548198675482190-
GWHAAZE00000007CDS7548169475481765-
GWHAAZE00000007CDS7548123775481464-
GWHAAZE00000007CDS7547918075479443-
GWHAAZE00000007CDS7547843875478579-
GWHAAZE00000007CDS7547621375476292-
Transcript Sequence

Network for GWHGAAZE026212

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00443.30UCH1114595.30E-43
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0016579biological_processprotein deubiquitination
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity
GO:0005515molecular_functionprotein binding
GO:0004843molecular_functionthiol-dependent ubiquitin-specific protease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.713
SRR3591706second leaf11.814
SRR3591707mature leaf14.133
SRR3591708Shoot apex15.370
SRR3591709Stem21.523
SRR3591710White floral bud16.653
SRR3591711White flower22.899
SRR3591712Green floral bud13.757
SRR3591713Yellow flower23.534
SRP173429 SRR8316895Juvenile bud stage 11.156
SRR8316896Juvenile bud stage 13.017
SRR8316897Juvenile bud stage 7.293
SRR8316894Third green stage 5.920
SRR8316900Third green stage 12.972
SRR8316901Third green stage 11.992
SRR8316898Complete white stage 5.474
SRR8316899Complete white stage 17.478
SRR8316903Complete white stage 11.615
SRR8316902Silver flowering stage6.784
SRR8316904Silver flowering stage11.949
SRR8316905Silver flowering stage4.829
SRR8316906Gold flowering stage 17.711
SRR8316907Gold flowering stage 15.503
SRR8316908Gold flowering stage 20.616
SRP132670SRR6706286Control8.872
SRR6706287Light intensity 50%9.195
SRR6706288Light intensity 20%9.557
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.973
CNS0095593Slightly white alabastrum(diploid) 210.173
CNS0095594Slightly white alabastrum(diploid) 39.217
CNS0095595Whole white alabastrum(diploid) 29.491
CNS0095596Whole white alabastrum(diploid) 35.790
CNS0095597Whole white alabastrum(diploid) 47.576
CNS0095598Silvery flower (diploied) 113.468
CNS0095599Silvery flower (diploied) 210.735
CNS0095600Silvery flower (diploied) 318.318
CNS0095601Golden flower (diploid) 19.950
CNS0095602Golden flower (diploid) 219.586
CNS0095603Golden flower (diploid) 319.220
CNS0095604Slightly white alabastrum(tetraploid) 111.444
CNS0095605Slightly white alabastrum(tetraploid) 28.821
CNS0095606Slightly white alabastrum(tetraploid) 320.680
CNS0095607Whole white alabastrum(tetraploid) 19.262
CNS0095608Whole white alabastrum(tetraploid) 25.458
CNS0095609Whole white alabastrum(tetraploid) 312.827
CNS0095610Silvery flower (tetraploid) 123.274
CNS0095611Silvery flower (tetraploid) 221.871
CNS0095612Silvery flower (tetraploid) 319.965
CNS0095613Golden flower (tetraploid) 111.723
CNS0095614Golden flower (tetraploid) 219.732
CNS0095615Golden flower (tetraploid) 321.478
CRA001975CRR073297Stem 116.731
CRR073298Stem 212.998
CRR073299Stem 312.285
CRR073300Leaf 114.160
CRR073301Leaf 211.472
CRR073302Leaf 38.772
CRR073303Juvenile bud 19.646
CRR073304Juvenile bud 26.423
CRR073305Juvenile bud 312.774
CRR073306Third green 15.233
CRR073307Third green 25.240
CRR073308Third green 34.772
CRR073309Second white 17.969
CRR073310Second white 29.521
CRR073311Second white 311.106
CRR073312Silver flowering 110.181
CRR073313Silver flowering 28.986
CRR073314Silver flowering 37.767
CRR073315Gold flowering 16.281
CRR073316Gold flowering 210.993
CRR073317Gold flowering 37.161
CRR073318Tawny withering 110.401
CRR073319Tawny withering 29.015
CRR073320Tawny withering 310.774