Gene detail

Detail information of GWHGAAZE026221

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG12935.1	4.13309E-52	hypothetical protein F383_19304 [Gossypium arboreum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-18	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A061EN93\|A0A061EN93_THECC	4E-52	F-box and associated interaction domains-containing protein, putative isoform 2 {ECO:0000313\|EMBL:EOY06306.1} (Fragment)
TAIR10	AT3G07870.1	4E-16	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45951	47338	+
GWHAAZE00000008	mRNA	45951	47338	+
GWHAAZE00000008	exon	45951	46370	+
GWHAAZE00000008	exon	46453	47170	+
GWHAAZE00000008	exon	47304	47338	+
GWHAAZE00000008	CDS	45951	46370	+
GWHAAZE00000008	CDS	46453	47170	+
GWHAAZE00000008	CDS	47304	47338	+

Transcript Sequence
>GWHTAAZE026255 ATGAGGCGCAAAAAAAGGAAGGCACAATCACAAACCCAATTACTCCATCATAATCACCAACAAGAAGAGCAAAAATGTGAAGAAACCAGGGAAGATCAAGAACCTGTTACTGTTCCATATCTCCCCACTCATATAGTCCTTGAAATACTCTCGAGAGTCCCAATCAAGACCATCTTCAATTGCCGCCTTGTCTGCAAGAACTGGTCAGCCCTCATCTCCACCCCTGAATTTGCACAACTCCACCTCTCAAGGTCGTCCACCAGCTGCTTGATAATACCCCTCTACAAAAAACGCAAATTCAAAAGACTCTACTTAATCGATCCCGAATACCCGTCCAGCTTCCAAGACAGGCTAGTGTTCGTCCCTAAGATCAACCTGCCCAATATTCGAATTGGTTTGATGAATTCTTGCAATGGGTTGGGAGTACATTTTTCTTCCAAATTCCCCAATTCCCCACATGGCACTCTATTTGATAGTTATAATTGTGCTTTTGGTTTTAGTCACAAGACCAATCAATACAAGGTGGTTTTTAATTATGGTAGCAATCACCGGGCTGAGATATACACACTTGGTCAAAGTTCAAGGTCATGGAGGAGCATTGAAGGCTCTCCTTACCGTATTTGGAATCATTATTATAATTCCTTACTTAATGGAGTTCTTCACTGGCTTGGACGTCATAGTTCGTGTCCATTTATTTGTAGTTTTGATTTTGTGACGACCGAGCAATTTCATGCAGTTCCTGAACCGTCTGAGTTTTCACGACGAGAGATGCTTCTATGGGATGATATGCAGGTGGGTGTAATAGATGGGAATCTTTCTATATGCGATTATAGTCACCGTGATCATGTTGCCATATGGGTGATGAGGGATTATGGAGTGAAAGAGTCTTGGAGCAAGGATATTGTTATTAATCACATGAGTTATGACACCAATCGTGGCAGTTATGAGTCGATAATGATTACAGGCAATGGTGAAATTTTGGTGATATTTAACAATAAGTGTATGATGCTATACAATCCCAAATCAGAAGCTTTTGGGTCTGAATTAAAAATCCCTGGAGTCGGTTCAAAATTTCGTGGAGTTGCTCATGTTTCAAGCTTAATTTCTCACGGATGTTGCAAAAGGAGAAAACGTCAAGAGTTGAGTTCAAACGGTCTTTATTGCTGCAATTAA

Network for GWHGAAZE026221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	41	77	3.50E-09
PF08268.13	FBA_3	216	334	6.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.555
	SRR3591706	second leaf	1.085
	SRR3591707	mature leaf	2.258
	SRR3591708	Shoot apex	2.078
	SRR3591709	Stem	1.845
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.267
	SRR8316896	Juvenile bud stage	0.472
	SRR8316897	Juvenile bud stage	0.344
	SRR8316894	Third green stage	0.561
	SRR8316900	Third green stage	0.947
	SRR8316901	Third green stage	0.525
	SRR8316898	Complete white stage	0.492
	SRR8316899	Complete white stage	0.747
	SRR8316903	Complete white stage	0.302
	SRR8316902	Silver flowering stage	0.532
	SRR8316904	Silver flowering stage	0.710
	SRR8316905	Silver flowering stage	0.139
	SRR8316906	Gold flowering stage	0.962
	SRR8316907	Gold flowering stage	0.703
	SRR8316908	Gold flowering stage	1.691
SRP132670	SRR6706286	Control	0.758
	SRR6706287	Light intensity 50%	0.785
	SRR6706288	Light intensity 20%	0.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.368
	CNS0095593	Slightly white alabastrum(diploid) 2	0.078
	CNS0095594	Slightly white alabastrum(diploid) 3	0.289
	CNS0095595	Whole white alabastrum(diploid) 2	0.631
	CNS0095596	Whole white alabastrum(diploid) 3	0.227
	CNS0095597	Whole white alabastrum(diploid) 4	0.216
	CNS0095598	Silvery flower (diploied) 1	0.779
	CNS0095599	Silvery flower (diploied) 2	0.200
	CNS0095600	Silvery flower (diploied) 3	0.650
	CNS0095601	Golden flower (diploid) 1	0.130
	CNS0095602	Golden flower (diploid) 2	0.564
	CNS0095603	Golden flower (diploid) 3	0.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.182
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.865
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.395
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.475
	CNS0095610	Silvery flower (tetraploid) 1	1.529
	CNS0095611	Silvery flower (tetraploid) 2	2.779
	CNS0095612	Silvery flower (tetraploid) 3	1.523
	CNS0095613	Golden flower (tetraploid) 1	0.511
	CNS0095614	Golden flower (tetraploid) 2	0.972
	CNS0095615	Golden flower (tetraploid) 3	0.294
CRA001975	CRR073297	Stem 1	0.765
	CRR073298	Stem 2	0.423
	CRR073299	Stem 3	1.004
	CRR073300	Leaf 1	0.705
	CRR073301	Leaf 2	0.667
	CRR073302	Leaf 3	0.381
	CRR073303	Juvenile bud 1	0.403
	CRR073304	Juvenile bud 2	0.552
	CRR073305	Juvenile bud 3	0.827
	CRR073306	Third green 1	0.299
	CRR073307	Third green 2	0.136
	CRR073308	Third green 3	0.114
	CRR073309	Second white 1	0.573
	CRR073310	Second white 2	0.410
	CRR073311	Second white 3	0.564
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.117
	CRR073314	Silver flowering 3	0.985
	CRR073315	Gold flowering 1	0.639
	CRR073316	Gold flowering 2	1.218
	CRR073317	Gold flowering 3	0.527
	CRR073318	Tawny withering 1	0.480
	CRR073319	Tawny withering 2	0.405
	CRR073320	Tawny withering 3	0.285