Gene detail

Detail information of GWHGAAZE026222

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035380.1	4.11255E-59	F-box and associated interaction domains-containing protein, putative isoform 2, partial [Theobroma cacao]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	1E-16	F-box protein At3g07870
trEMBL	tr\|A0A061EN93\|A0A061EN93_THECC	2E-59	F-box and associated interaction domains-containing protein, putative isoform 2 {ECO:0000313\|EMBL:EOY06306.1} (Fragment)
TAIR10	AT3G07870.1	3E-15	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	54585	55810	-
GWHAAZE00000008	mRNA	54585	55810	-
GWHAAZE00000008	exon	54585	54907	-
GWHAAZE00000008	exon	54997	55810	-
GWHAAZE00000008	CDS	54997	55810	-
GWHAAZE00000008	CDS	54585	54907	-

Transcript Sequence
>GWHTAAZE026256 ATGAGTAGCACCAGCAGAAAAAGGAAGGCACAATCACAAAATCCCCACCATAATCACCAACAAGAAGAGGAAAAATGTGAAGAAACCAGCGAAGATCAAGAACCTATTAATGTTCCATATCTCCCCAATCCTATAGTCATCGAAATACTCTCGAGAGTCCGAATCAAGACCCTGTTCAGTTGCCGCCTTGTCTGCAAGAACTGGGCAGCCCTTACCTCCACCCCAGATTTTGCAGAATTCCACCTCTCAAGGTCGCCCAACAGCTGTTTGATAAAACCCCTCAACAAGAAACGGCAATCCAGAAGGCTTCATTTGATCGACCCCGAATGCCCGTATAGCCTCCGCAACAAGCTAGTGTTCATTCCCAAGATTAACCTGCCCAATGTTCCAATTGATTTGATCAATTCTTGCAATGGCTTGGTTTGCTTGTGCCAACTCATCTCTCATGATTCCAGTGATGCTTGCAATATCTATGTGTGTAATCCGGTACTCGGGGAGTACATTACCCTTCCAAAACCCCCGGATTTCACAAAATTTGATAGTCGTGATTGTGTTTTTGGTTTTAGCCACAAGACCAATCAATACAAGGTGATTTTAACATATTATAACAGTGGCAATAGTCGGACCGAGATATACACAGTTGGTGAAGGGTCCTGGAGAAGCATTGCGAATTCTCCTTACCCTATTTGGAATAATAATTTTATGCTTGTCTCAATGGATCCCTTCACTGGATTCCTAGTACCCTTCAATGTCCCTTCATTGGTTGTTTTGATTTTGCGAGTGAGCAGTTTGGTGGAGTTCCTGAACCTTCCGATCGGCGATCGTATTGTCATATGGGAGATGAAGGATTATGGAGTGAAAGAGTCCTGGAGCAAGTACATTGTCATTACCCACATGATTTATGACACTGACTTTGACACTTATGAGCCTATAATGATAAAGGGCAATGGTGAAATTTTAATGATATTTAACAATGATTCTATCATGCTATATGATCCCAAATGTAAATGTTTTGAGTCTGAACTGAAAATCTATGGGATCAGTTCAGAATTTCATGCAATAGCTCATGTTCCTAGCTTGATTTCACTCAAGGATGTTGCAAAAGGAGAAAATCTCAAGGTATGCAATTCAAATTGA

Network for GWHGAAZE026222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	39	74	4.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.573
	SRR3591706	second leaf	0.159
	SRR3591707	mature leaf	0.107
	SRR3591708	Shoot apex	0.510
	SRR3591709	Stem	0.312
	SRR3591710	White floral bud	0.426
	SRR3591711	White flower	0.242
	SRR3591712	Green floral bud	0.313
	SRR3591713	Yellow flower	0.309
SRP173429	SRR8316895	Juvenile bud stage	0.183
	SRR8316896	Juvenile bud stage	0.414
	SRR8316897	Juvenile bud stage	0.166
	SRR8316894	Third green stage	0.222
	SRR8316900	Third green stage	0.442
	SRR8316901	Third green stage	0.350
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.208
	SRR8316903	Complete white stage	0.030
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.132
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.009
	SRR8316907	Gold flowering stage	0.134
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.419
	SRR6706287	Light intensity 50%	0.359
	SRR6706288	Light intensity 20%	0.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.267
	CNS0095593	Slightly white alabastrum(diploid) 2	0.339
	CNS0095594	Slightly white alabastrum(diploid) 3	0.413
	CNS0095595	Whole white alabastrum(diploid) 2	0.299
	CNS0095596	Whole white alabastrum(diploid) 3	0.089
	CNS0095597	Whole white alabastrum(diploid) 4	0.151
	CNS0095598	Silvery flower (diploied) 1	0.440
	CNS0095599	Silvery flower (diploied) 2	0.141
	CNS0095600	Silvery flower (diploied) 3	0.467
	CNS0095601	Golden flower (diploid) 1	0.082
	CNS0095602	Golden flower (diploid) 2	0.171
	CNS0095603	Golden flower (diploid) 3	0.239
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.435
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.327
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.377
	CNS0095610	Silvery flower (tetraploid) 1	0.133
	CNS0095611	Silvery flower (tetraploid) 2	0.247
	CNS0095612	Silvery flower (tetraploid) 3	0.474
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.380
	CRR073298	Stem 2	0.437
	CRR073299	Stem 3	0.557
	CRR073300	Leaf 1	0.238
	CRR073301	Leaf 2	0.236
	CRR073302	Leaf 3	0.431
	CRR073303	Juvenile bud 1	0.235
	CRR073304	Juvenile bud 2	0.134
	CRR073305	Juvenile bud 3	0.393
	CRR073306	Third green 1	0.126
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.019
	CRR073310	Second white 2	0.135
	CRR073311	Second white 3	0.143
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.199
	CRR073316	Gold flowering 2	0.421
	CRR073317	Gold flowering 3	0.149
	CRR073318	Tawny withering 1	0.869
	CRR073319	Tawny withering 2	0.713
	CRR073320	Tawny withering 3	0.616