Detail information of GWHGAAZE026222


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007035380.14.11255E-59F-box and associated interaction domains-containing protein, putative isoform 2, partial [Theobroma cacao]
Swissprottr|Q9SFC7|FB135_ARATH1E-16F-box protein At3g07870
trEMBLtr|A0A061EN93|A0A061EN93_THECC2E-59F-box and associated interaction domains-containing protein, putative isoform 2 {ECO:0000313|EMBL:EOY06306.1} (Fragment)
TAIR10AT3G07870.13E-15F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5458555810-
GWHAAZE00000008mRNA5458555810-
GWHAAZE00000008exon5458554907-
GWHAAZE00000008exon5499755810-
GWHAAZE00000008CDS5499755810-
GWHAAZE00000008CDS5458554907-
Transcript Sequence

Network for GWHGAAZE026222

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like39744.80E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.573
SRR3591706second leaf0.159
SRR3591707mature leaf0.107
SRR3591708Shoot apex0.510
SRR3591709Stem0.312
SRR3591710White floral bud0.426
SRR3591711White flower0.242
SRR3591712Green floral bud0.313
SRR3591713Yellow flower0.309
SRP173429 SRR8316895Juvenile bud stage 0.183
SRR8316896Juvenile bud stage 0.414
SRR8316897Juvenile bud stage 0.166
SRR8316894Third green stage 0.222
SRR8316900Third green stage 0.442
SRR8316901Third green stage 0.350
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.208
SRR8316903Complete white stage 0.030
SRR8316902Silver flowering stage0.025
SRR8316904Silver flowering stage0.132
SRR8316905Silver flowering stage0.019
SRR8316906Gold flowering stage 0.009
SRR8316907Gold flowering stage 0.134
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.419
SRR6706287Light intensity 50%0.359
SRR6706288Light intensity 20%0.473
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.267
CNS0095593Slightly white alabastrum(diploid) 20.339
CNS0095594Slightly white alabastrum(diploid) 30.413
CNS0095595Whole white alabastrum(diploid) 20.299
CNS0095596Whole white alabastrum(diploid) 30.089
CNS0095597Whole white alabastrum(diploid) 40.151
CNS0095598Silvery flower (diploied) 10.440
CNS0095599Silvery flower (diploied) 20.141
CNS0095600Silvery flower (diploied) 30.467
CNS0095601Golden flower (diploid) 10.082
CNS0095602Golden flower (diploid) 20.171
CNS0095603Golden flower (diploid) 30.239
CNS0095604Slightly white alabastrum(tetraploid) 10.435
CNS0095605Slightly white alabastrum(tetraploid) 20.327
CNS0095606Slightly white alabastrum(tetraploid) 30.573
CNS0095607Whole white alabastrum(tetraploid) 10.192
CNS0095608Whole white alabastrum(tetraploid) 20.121
CNS0095609Whole white alabastrum(tetraploid) 30.377
CNS0095610Silvery flower (tetraploid) 10.133
CNS0095611Silvery flower (tetraploid) 20.247
CNS0095612Silvery flower (tetraploid) 30.474
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.380
CRR073298Stem 20.437
CRR073299Stem 30.557
CRR073300Leaf 10.238
CRR073301Leaf 20.236
CRR073302Leaf 30.431
CRR073303Juvenile bud 10.235
CRR073304Juvenile bud 20.134
CRR073305Juvenile bud 30.393
CRR073306Third green 10.126
CRR073307Third green 20.024
CRR073308Third green 30.000
CRR073309Second white 10.019
CRR073310Second white 20.135
CRR073311Second white 30.143
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.199
CRR073316Gold flowering 20.421
CRR073317Gold flowering 30.149
CRR073318Tawny withering 10.869
CRR073319Tawny withering 20.713
CRR073320Tawny withering 30.616