Gene detail

Detail information of GWHGAAZE026229

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004512325.1	2.4437E-158	PREDICTED: F-box protein SKIP31-like [Cicer arietinum]
Swissprot	tr\|Q9FHK0\|SKI31_ARATH	2E-120	F-box protein SKIP31
trEMBL	tr\|I1J879\|I1J879_SOYBN	1E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G35750.1}
TAIR10	AT5G45360.1	1E-97	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	356946	369041	+
GWHAAZE00000008	mRNA	356946	369041	+
GWHAAZE00000008	exon	356946	357023	+
GWHAAZE00000008	exon	358227	358451	+
GWHAAZE00000008	exon	359200	359273	+
GWHAAZE00000008	exon	362272	362347	+
GWHAAZE00000008	exon	363851	363961	+
GWHAAZE00000008	exon	364976	365150	+
GWHAAZE00000008	exon	366606	366658	+
GWHAAZE00000008	exon	367586	367643	+
GWHAAZE00000008	exon	368723	369041	+
GWHAAZE00000008	CDS	356946	357023	+
GWHAAZE00000008	CDS	358227	358451	+
GWHAAZE00000008	CDS	359200	359273	+
GWHAAZE00000008	CDS	362272	362347	+
GWHAAZE00000008	CDS	363851	363961	+
GWHAAZE00000008	CDS	364976	365150	+
GWHAAZE00000008	CDS	366606	366658	+
GWHAAZE00000008	CDS	367586	367643	+
GWHAAZE00000008	CDS	368723	368793	+
GWHAAZE00000008	three_prime_UTR	368794	369041	+

Transcript Sequence
>GWHTAAZE026263 ATGACAGTTTCTGAAGACGAAGATGATAGTCTTGCTCAGTTCCTCGAATCTGAGGTTCTCTCTGAAGTCTCCGATCAGGAAGATACAAAACTTTATAAAGATGAGGAAGTATGTCCGAAGCCGAAGAGGGTACGTGTTGATGAAGGAAGTTCAACCAGATCAAATGAAGTAGTTGCTTGTAGCAGTAGTGGTGGTAAGGATTCTTTGAAGAGCAGAACAAATCCGAGGAGGATAGATACAGGGTTTTTCAGCAATGTCCCTCCTGAACTCTTTCATCACATCCTCAAATTCTTATCATCCGAGGATCTTGTTTCTTGCTCGCTGGTTTGCAGATTCCTGAATTTCGTTGCTTCTGATGAGTGCTTGTGGCGACGCCTGTATTGTTTGCGATGGGGTTTGTTGCCACCGACGAAGAAGTTACGGGATTGTGCCTGGAAAAAGCTTTACATTCAGCGTGATGAACAGGACATGGCTGAGTTTGTTAGAAATTGCCCTACTGAGTTCAAAGAGTATTACATCCAAATGCAGGTGGCAAAGAGAAGCCAAGCACCTCTTCCTTCTCAGGTGAATGATGACCAGATAATTCTGGATAAAACTGTTGCTGATCAAGTGTCAACGTGGAAGAGCAGCAGAGGCCTGACTGATAAAGTGTTTACTGATCATGCTTGCTCTGGAGAAACATGTTCTTACTATCAGCTTGGAGATGTATTTGTTTGTGAGAAGACTGGACATGTTCACGTTTGTGATGATACTTGCAAAGAAGTTATTCTGGATCCAGTAAATGAGCTCTTGGAACAGCAGCAAGGTGGTGGTGATGAAGCAGAGCCATTCATGGGATCCGGGCGTTTTGCAAGGGCTTATTTATTGGGATATAATTGCGATGATGAGAAGGAATTAGAAGCTTGTTGGAGGTTTTGCTGATGAGATTCAAAGTTCATCATCTCTCAATTAAGTTGGATTTTGTGGGGCTGCAAAGAGGAAATGTGCTTTTAGTTTAATCTCATTTTGAATGTTTTAATATTTGCTCAAGTTCGTGTAGTATGTACGTATTTACGAATGAACCATTTGTATTAGGTACTAAATGTATCCTATTTTGGTATTTATCATAATCTACCCAAATGGTATCAATCTAATCTACTTAACGGGTGCAGTAGGTACACCGTTTCCAA

Network for GWHGAAZE026229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	84	128	4.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.023
	SRR3591706	second leaf	19.047
	SRR3591707	mature leaf	26.231
	SRR3591708	Shoot apex	36.890
	SRR3591709	Stem	50.802
	SRR3591710	White floral bud	59.368
	SRR3591711	White flower	58.135
	SRR3591712	Green floral bud	55.220
	SRR3591713	Yellow flower	47.957
SRP173429	SRR8316895	Juvenile bud stage	30.158
	SRR8316896	Juvenile bud stage	42.100
	SRR8316897	Juvenile bud stage	23.054
	SRR8316894	Third green stage	17.121
	SRR8316900	Third green stage	53.400
	SRR8316901	Third green stage	45.666
	SRR8316898	Complete white stage	20.193
	SRR8316899	Complete white stage	71.253
	SRR8316903	Complete white stage	31.686
	SRR8316902	Silver flowering stage	20.526
	SRR8316904	Silver flowering stage	25.882
	SRR8316905	Silver flowering stage	13.461
	SRR8316906	Gold flowering stage	39.042
	SRR8316907	Gold flowering stage	39.031
	SRR8316908	Gold flowering stage	42.596
SRP132670	SRR6706286	Control	40.741
	SRR6706287	Light intensity 50%	37.726
	SRR6706288	Light intensity 20%	38.548
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.804
	CNS0095593	Slightly white alabastrum(diploid) 2	39.800
	CNS0095594	Slightly white alabastrum(diploid) 3	28.082
	CNS0095595	Whole white alabastrum(diploid) 2	39.834
	CNS0095596	Whole white alabastrum(diploid) 3	45.940
	CNS0095597	Whole white alabastrum(diploid) 4	42.061
	CNS0095598	Silvery flower (diploied) 1	39.816
	CNS0095599	Silvery flower (diploied) 2	37.913
	CNS0095600	Silvery flower (diploied) 3	53.761
	CNS0095601	Golden flower (diploid) 1	42.427
	CNS0095602	Golden flower (diploid) 2	41.961
	CNS0095603	Golden flower (diploid) 3	44.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.899
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.049
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.887
	CNS0095610	Silvery flower (tetraploid) 1	49.964
	CNS0095611	Silvery flower (tetraploid) 2	52.461
	CNS0095612	Silvery flower (tetraploid) 3	57.932
	CNS0095613	Golden flower (tetraploid) 1	36.431
	CNS0095614	Golden flower (tetraploid) 2	43.023
	CNS0095615	Golden flower (tetraploid) 3	29.688
CRA001975	CRR073297	Stem 1	38.919
	CRR073298	Stem 2	37.136
	CRR073299	Stem 3	43.051
	CRR073300	Leaf 1	42.133
	CRR073301	Leaf 2	38.674
	CRR073302	Leaf 3	37.413
	CRR073303	Juvenile bud 1	41.108
	CRR073304	Juvenile bud 2	35.102
	CRR073305	Juvenile bud 3	34.496
	CRR073306	Third green 1	17.198
	CRR073307	Third green 2	20.508
	CRR073308	Third green 3	18.661
	CRR073309	Second white 1	16.849
	CRR073310	Second white 2	15.313
	CRR073311	Second white 3	11.566
	CRR073312	Silver flowering 1	14.031
	CRR073313	Silver flowering 2	17.195
	CRR073314	Silver flowering 3	15.625
	CRR073315	Gold flowering 1	33.304
	CRR073316	Gold flowering 2	48.254
	CRR073317	Gold flowering 3	30.910
	CRR073318	Tawny withering 1	39.437
	CRR073319	Tawny withering 2	33.173
	CRR073320	Tawny withering 3	42.077