Gene detail

Detail information of GWHGAAZE026231

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283505.1	9.2959E-179	PREDICTED: acetylglutamate kinase, chloroplastic [Vitis vinifera]
COG	YP_007122923.1	2E-127	N-acetylglutamate kinase
Swissprot	tr\|Q9SCL7\|NAGK_ARATH	6E-149	Acetylglutamate kinase, chloroplastic (Precursor)
trEMBL	tr\|F6H2W8\|F6H2W8_VITVI	3E-179	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46679.1}
TAIR10	AT3G57560.1	3E-118	N-acetyl-l-glutamate kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	382921	384352	-
GWHAAZE00000008	mRNA	382921	384352	-
GWHAAZE00000008	exon	382921	383474	-
GWHAAZE00000008	exon	384007	384352	-
GWHAAZE00000008	CDS	384007	384352	-
GWHAAZE00000008	CDS	382921	383474	-

Transcript Sequence
>GWHTAAZE026265 TCATCCTCACAATCAGCAATCCTCACCGAGAAAACCCTAACAACCACCCCACCTCAAACTCGGGTCAGAATCCTATCCGAAGCACTCCCCTTCATCCAGAAATTCCGCGGCAAGACCATCGTAGTCAAGTATGGCGGCGCCGCCATGAAATCCGAGTCCCTACAAGCTTCCGTGATCGCCGATCTTGTCCTCCTCTCCTGTGTCGGCCTCCGTATAGTCTTCGTCCATGGCGGCGGCCCGGAGATCAACCTCTGGCTTGGTCGTCTTGGCCTAAAACCTAATTTCCTCAACGGCCTCCGAGTCACGGACGCCTCAACAATGGAGATTGTGTCAATGGTGCTCGTGGGTAAAGTTAACAAGCATCTTGTTTCGCTAATCAACAAGGCTGGAGCCACCGCCGTTGGATTATCCGGGATCGACGGTCGGTTACTCACCGCCAGCCCTTCCCCCAATTCTGCCCAGCTAGGGTTTGTCGGAGATATAGCCACCGTGGACCCCACCGTTCTCCGGCCACTCATTTTGGACAACCACATTCCGGTCATTGCGTCGGTGGCAGCAGACCCGACAGGGCAGTCGTATAATATAAATGCCGACACGGCGGCGGGGGAGCTGGCGGCAGCTTTGGGGGCGGAGAAGTTGATTTTGCTGACGGATGTGGCCGGAATTTTGGAGAATCGGGATGATCCGGCGAGTTTGGTGAAGCAAATTGATATCAAAGGGGTGAAGAAGATGATGGAGGATGGGAAAATTGCTGGTGGGATGATTCCGAAGGTTAATTGCTGTGTTCGATCTCTTGCTCAGGGGGTTAGAACCTCTAGTATTATTGATGGGAGACTTGAGCACTCTTTGTTGCTAGAGATTCTCACCGATGAAGGAGCTGGAACCATGATAACTGGATGA

Network for GWHGAAZE026231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	38	274	5.30E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00930	argB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	biological_process	arginine biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0003991	molecular_function	acetylglutamate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.135
	SRR3591706	second leaf	21.560
	SRR3591707	mature leaf	13.021
	SRR3591708	Shoot apex	23.230
	SRR3591709	Stem	15.192
	SRR3591710	White floral bud	22.545
	SRR3591711	White flower	27.305
	SRR3591712	Green floral bud	32.016
	SRR3591713	Yellow flower	24.020
SRP173429	SRR8316895	Juvenile bud stage	18.781
	SRR8316896	Juvenile bud stage	22.801
	SRR8316897	Juvenile bud stage	13.948
	SRR8316894	Third green stage	8.973
	SRR8316900	Third green stage	32.992
	SRR8316901	Third green stage	27.432
	SRR8316898	Complete white stage	5.899
	SRR8316899	Complete white stage	33.768
	SRR8316903	Complete white stage	12.950
	SRR8316902	Silver flowering stage	9.324
	SRR8316904	Silver flowering stage	10.800
	SRR8316905	Silver flowering stage	6.228
	SRR8316906	Gold flowering stage	20.469
	SRR8316907	Gold flowering stage	23.589
	SRR8316908	Gold flowering stage	27.207
SRP132670	SRR6706286	Control	31.053
	SRR6706287	Light intensity 50%	33.715
	SRR6706288	Light intensity 20%	35.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.760
	CNS0095593	Slightly white alabastrum(diploid) 2	22.215
	CNS0095594	Slightly white alabastrum(diploid) 3	19.694
	CNS0095595	Whole white alabastrum(diploid) 2	19.625
	CNS0095596	Whole white alabastrum(diploid) 3	18.331
	CNS0095597	Whole white alabastrum(diploid) 4	15.379
	CNS0095598	Silvery flower (diploied) 1	18.724
	CNS0095599	Silvery flower (diploied) 2	22.003
	CNS0095600	Silvery flower (diploied) 3	25.148
	CNS0095601	Golden flower (diploid) 1	15.447
	CNS0095602	Golden flower (diploid) 2	23.029
	CNS0095603	Golden flower (diploid) 3	23.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.640
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.689
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.942
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.884
	CNS0095610	Silvery flower (tetraploid) 1	25.302
	CNS0095611	Silvery flower (tetraploid) 2	23.910
	CNS0095612	Silvery flower (tetraploid) 3	16.981
	CNS0095613	Golden flower (tetraploid) 1	14.210
	CNS0095614	Golden flower (tetraploid) 2	28.198
	CNS0095615	Golden flower (tetraploid) 3	22.551
CRA001975	CRR073297	Stem 1	27.383
	CRR073298	Stem 2	27.955
	CRR073299	Stem 3	36.632
	CRR073300	Leaf 1	29.570
	CRR073301	Leaf 2	29.569
	CRR073302	Leaf 3	36.667
	CRR073303	Juvenile bud 1	34.364
	CRR073304	Juvenile bud 2	28.508
	CRR073305	Juvenile bud 3	41.865
	CRR073306	Third green 1	4.603
	CRR073307	Third green 2	6.587
	CRR073308	Third green 3	6.675
	CRR073309	Second white 1	9.076
	CRR073310	Second white 2	9.570
	CRR073311	Second white 3	7.343
	CRR073312	Silver flowering 1	7.776
	CRR073313	Silver flowering 2	10.538
	CRR073314	Silver flowering 3	6.929
	CRR073315	Gold flowering 1	20.847
	CRR073316	Gold flowering 2	28.118
	CRR073317	Gold flowering 3	28.391
	CRR073318	Tawny withering 1	23.922
	CRR073319	Tawny withering 2	22.904
	CRR073320	Tawny withering 3	33.518