Gene detail

Detail information of GWHGAAZE026232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10759.1	6.3146E-161	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GX84\|C3H1_ARATH	3E-148	Zinc finger CCCH domain-containing protein 1
trEMBL	tr\|A0A068UR94\|A0A068UR94_COFCA	2E-161	Coffea canephora DH200=94 genomic scaffold, scaffold_47 {ECO:0000313\|EMBL:CDP10759.1}
TAIR10	AT1G01350.1	5E-103	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	390897	392105	+
GWHAAZE00000008	mRNA	390897	392105	+
GWHAAZE00000008	exon	390897	390945	+
GWHAAZE00000008	exon	391032	391870	+
GWHAAZE00000008	exon	392019	392105	+
GWHAAZE00000008	CDS	390897	390945	+
GWHAAZE00000008	CDS	391032	391870	+
GWHAAZE00000008	CDS	392019	392105	+

Transcript Sequence
>GWHTAAZE026266 ATGGCGGATTCAAGTGATCAACCGCAAGCTGAACCACAATCCGAACCTGTATGCAGCTTTTTTCGAAAACCGTCAAAGAACAGAAACATTAGGAAGCGAACTATTGATGAAAATGAAACCACCGAAGAAGATTCTAAATCCGAGACCTCGATTATACCTAATAAGAAGAAACCCCCAATTCACGACAATAAACTACACTTCTCTACTGGACCTTCAAAGCAATCGACGAATTCTGAATCTGAGCCTGTTGAATCGAAAACCACAATGTTTCAATTTGAGTCATCAAAGGAAATTCAAGTCCAGAATGATAGCAAGGCAACTGCAACCCTTGAGACCGAGACAGATTTTTCAAGAGATTCTCGGGCGATTAGAGAGAGAGTTCTTAAGCAGGCAGAGGAAGCTTTGAAGGGGAAGAAAAAGGGTGATGGGGATGAAAAATTGTACAAGGGGATTCACGGGTATACTGATTACAAGGCTGGGTTTCGACGGGAGCATACGGTTTCTGGCGAGAAAGCGGGCGGGGCACATGGGCCTCTTAGGGCTTCAGCCCATATTAGAGTGTCAGCAAGGTTCGATTATCAGCCGGATATCTGTAAGGATTACAAAGAGACCGGATATTGTGGGTATGGGGATGCGTGTAAGTTTATGCACGATCGAGGGGATTACAAGCCCGGGTGGCAGTTGGAGAAGGAGTGGGAAGAAGCAGAGAAAGTAAGGAAGAGAAACTTGGCTATGGGACTTCTTGATGATGATGAGGAGGAGGGTGCAGTGCAGAGTGATGAAGATGATGATGCGTTGCCATTCGCGTGTTTCATTTGTAGGCAGCCTTTTGTGGATGCTGTTGTCACTAAGTGCAAACACTACTTCTGTGAGCATTGCGCTTTAAAAGTAAGGCATCAATCTGGACCAGGGTCTGGGCAAGGGCTTAGCCTGCGAGTGGACGAACAAATGCCCAGTTTGGATTGGCTTCCTTGA

Network for GWHGAAZE026232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	193	218	6.50E-10
PF00097.26	zf-C3HC4	270	299	8.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.895
	SRR3591706	second leaf	8.600
	SRR3591707	mature leaf	14.603
	SRR3591708	Shoot apex	9.310
	SRR3591709	Stem	13.636
	SRR3591710	White floral bud	16.391
	SRR3591711	White flower	21.698
	SRR3591712	Green floral bud	14.207
	SRR3591713	Yellow flower	17.367
SRP173429	SRR8316895	Juvenile bud stage	13.514
	SRR8316896	Juvenile bud stage	15.264
	SRR8316897	Juvenile bud stage	11.432
	SRR8316894	Third green stage	7.044
	SRR8316900	Third green stage	15.921
	SRR8316901	Third green stage	15.928
	SRR8316898	Complete white stage	9.207
	SRR8316899	Complete white stage	29.241
	SRR8316903	Complete white stage	16.265
	SRR8316902	Silver flowering stage	9.762
	SRR8316904	Silver flowering stage	14.951
	SRR8316905	Silver flowering stage	7.349
	SRR8316906	Gold flowering stage	26.560
	SRR8316907	Gold flowering stage	23.968
	SRR8316908	Gold flowering stage	34.674
SRP132670	SRR6706286	Control	22.020
	SRR6706287	Light intensity 50%	22.985
	SRR6706288	Light intensity 20%	21.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.614
	CNS0095593	Slightly white alabastrum(diploid) 2	15.417
	CNS0095594	Slightly white alabastrum(diploid) 3	10.508
	CNS0095595	Whole white alabastrum(diploid) 2	9.645
	CNS0095596	Whole white alabastrum(diploid) 3	12.210
	CNS0095597	Whole white alabastrum(diploid) 4	15.099
	CNS0095598	Silvery flower (diploied) 1	20.215
	CNS0095599	Silvery flower (diploied) 2	16.821
	CNS0095600	Silvery flower (diploied) 3	22.767
	CNS0095601	Golden flower (diploid) 1	19.992
	CNS0095602	Golden flower (diploid) 2	21.825
	CNS0095603	Golden flower (diploid) 3	20.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.189
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.815
	CNS0095610	Silvery flower (tetraploid) 1	36.807
	CNS0095611	Silvery flower (tetraploid) 2	24.985
	CNS0095612	Silvery flower (tetraploid) 3	24.989
	CNS0095613	Golden flower (tetraploid) 1	25.632
	CNS0095614	Golden flower (tetraploid) 2	30.149
	CNS0095615	Golden flower (tetraploid) 3	28.678
CRA001975	CRR073297	Stem 1	18.067
	CRR073298	Stem 2	16.239
	CRR073299	Stem 3	16.561
	CRR073300	Leaf 1	17.522
	CRR073301	Leaf 2	14.626
	CRR073302	Leaf 3	16.306
	CRR073303	Juvenile bud 1	13.269
	CRR073304	Juvenile bud 2	15.401
	CRR073305	Juvenile bud 3	19.985
	CRR073306	Third green 1	15.553
	CRR073307	Third green 2	18.184
	CRR073308	Third green 3	15.767
	CRR073309	Second white 1	17.829
	CRR073310	Second white 2	17.018
	CRR073311	Second white 3	18.072
	CRR073312	Silver flowering 1	14.250
	CRR073313	Silver flowering 2	11.685
	CRR073314	Silver flowering 3	10.470
	CRR073315	Gold flowering 1	13.095
	CRR073316	Gold flowering 2	16.264
	CRR073317	Gold flowering 3	12.636
	CRR073318	Tawny withering 1	16.914
	CRR073319	Tawny withering 2	15.153
	CRR073320	Tawny withering 3	17.392