Detail information of GWHGAAZE026233


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007035380.16.59615E-82F-box and associated interaction domains-containing protein, putative isoform 2, partial [Theobroma cacao]
Swissprottr|Q9SFC7|FB135_ARATH7E-28F-box protein At3g07870
trEMBLtr|A0A061EN93|A0A061EN93_THECC2E-82F-box and associated interaction domains-containing protein, putative isoform 2 {ECO:0000313|EMBL:EOY06306.1} (Fragment)
TAIR10AT3G07870.12E-25F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene402958404184+
GWHAAZE00000008mRNA402958404184+
GWHAAZE00000008exon402958404184+
GWHAAZE00000008CDS402958404184+
Transcript Sequence

Network for GWHGAAZE026233

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like39745.30E-07
PF07734.14FBA_12373561.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.592
SRR3591706second leaf0.148
SRR3591707mature leaf0.100
SRR3591708Shoot apex1.016
SRR3591709Stem0.491
SRR3591710White floral bud0.275
SRR3591711White flower0.451
SRR3591712Green floral bud0.387
SRR3591713Yellow flower0.332
SRP173429 SRR8316895Juvenile bud stage 0.304
SRR8316896Juvenile bud stage 0.306
SRR8316897Juvenile bud stage 0.356
SRR8316894Third green stage 0.235
SRR8316900Third green stage 0.438
SRR8316901Third green stage 0.166
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.462
SRR8316903Complete white stage 0.028
SRR8316902Silver flowering stage0.083
SRR8316904Silver flowering stage0.055
SRR8316905Silver flowering stage0.084
SRR8316906Gold flowering stage 0.098
SRR8316907Gold flowering stage 0.195
SRR8316908Gold flowering stage 0.059
SRP132670SRR6706286Control0.530
SRR6706287Light intensity 50%0.344
SRR6706288Light intensity 20%0.705
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.537
CNS0095593Slightly white alabastrum(diploid) 20.573
CNS0095594Slightly white alabastrum(diploid) 30.305
CNS0095595Whole white alabastrum(diploid) 20.313
CNS0095596Whole white alabastrum(diploid) 30.323
CNS0095597Whole white alabastrum(diploid) 40.068
CNS0095598Silvery flower (diploied) 10.346
CNS0095599Silvery flower (diploied) 20.131
CNS0095600Silvery flower (diploied) 30.342
CNS0095601Golden flower (diploid) 10.029
CNS0095602Golden flower (diploid) 20.251
CNS0095603Golden flower (diploid) 30.280
CNS0095604Slightly white alabastrum(tetraploid) 10.383
CNS0095605Slightly white alabastrum(tetraploid) 20.688
CNS0095606Slightly white alabastrum(tetraploid) 30.895
CNS0095607Whole white alabastrum(tetraploid) 10.425
CNS0095608Whole white alabastrum(tetraploid) 20.146
CNS0095609Whole white alabastrum(tetraploid) 30.686
CNS0095610Silvery flower (tetraploid) 10.614
CNS0095611Silvery flower (tetraploid) 20.142
CNS0095612Silvery flower (tetraploid) 30.318
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.155
CNS0095615Golden flower (tetraploid) 30.028
CRA001975CRR073297Stem 10.506
CRR073298Stem 20.871
CRR073299Stem 30.166
CRR073300Leaf 10.170
CRR073301Leaf 20.370
CRR073302Leaf 30.260
CRR073303Juvenile bud 10.342
CRR073304Juvenile bud 20.036
CRR073305Juvenile bud 30.297
CRR073306Third green 10.117
CRR073307Third green 20.022
CRR073308Third green 30.000
CRR073309Second white 10.064
CRR073310Second white 20.231
CRR073311Second white 30.160
CRR073312Silver flowering 10.015
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.566
CRR073316Gold flowering 21.200
CRR073317Gold flowering 30.138
CRR073318Tawny withering 10.311
CRR073319Tawny withering 21.173
CRR073320Tawny withering 30.305