Gene detail

Detail information of GWHGAAZE026237

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACN78586.1	0	4-hydroxyphenylpyruvate dioxygenase [Lactuca sativa]
COG	YP_003571438.1	6E-54	4-hydroxyphenylpyruvate dioxygenase
Swissprot	tr\|O23920\|HPPD_DAUCA	6E-171	4-hydroxyphenylpyruvate dioxygenase
trEMBL	tr\|D2CZY0\|D2CZY0_LACSA	0	4-hydroxyphenylpyruvate dioxygenase {ECO:0000256\|PIRNR:PIRNR009283}
TAIR10	AT1G06570.1	2E-125	phytoene desaturation 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	795492	797804	+
GWHAAZE00000008	mRNA	795492	797804	+
GWHAAZE00000008	exon	795492	795907	+
GWHAAZE00000008	exon	797153	797804	+
GWHAAZE00000008	CDS	795492	795907	+
GWHAAZE00000008	CDS	797153	797804	+

Transcript Sequence
>GWHTAAZE026271 ATGCCGATTATCGCGAAATCCGACCTCTCCACCGGCAACTCCGTCCACGCCTCCTACCTCCTCCGCAGCGGCAATCTCAACTTCCTCTTCACAGCACCCTACTCCCCTACAATCGCCGCAGCCGGAACCACGGGTTCGGCCTCTATCCCCACCTTCACCCACTCCGCCTGCCACTCCTTCACCGCCTCCCATGGCCTCGGGGTCCGTGCCATCGCGATCGAAGTCGAAGACGCTGATATCGCGTTTTCGGCTAGTGTTGCGCATGGTGCTAAGCCTGTTTCCCCTCCGGTCAACCTCGGTGACAGCGCCGTACTGGCTGAAGTGCATCTTTACGGCGACGTCGTTTTGCGATACATCAGTTACAAAATCACTACCTCGAGTAGTCCAAATCCAGGCCCTGATGGCATCTCCACCGGTTCTAATTTTGACTTCTTGCCGGGATTCGAAAAAGTTGACGGAACGTCATCGTTTCCCGATCTCGATTTCGGGATCCGGCGGCTTGACCACGCAGTAGGCAATGTACAAAACCTTGGATCTGCCGTGGAATATGTCAAATCCTTCACTGGGTTCCACGAATTCGCTGAATTCACGGCGGAGGATGTCGGCACGAGCGAGAGCGGCTTGAACTCGATGGTGCTTGCGAGCAATGACGAGATGGTGCTTTTGCCGATGAACGAGCCAGTGTATGGAACTAAGAGAAAAAGTCAGATCCAGACTTATTTGGAGCACAATGAAGGTGCAGGAGTTCAGCATTTGGCATTGGTGAGTGAAGATATATTCAGGACTTTGAGAGAAATGAGGAAAAGGAGTGGTGTCGGTGGGTTCGAGTTCATGCCTGCACCACCGCCGACGTACTACCGGAATCTGAAGAACCGGGCCAGCGATGTGCTGAGCGATGAGCAGATTAAGGAGTGTGAGGAGTTGGGGATTTTGGTTGATAGGGATGATCAGGGGACTCTGCTTCAGATCTTCACCAAGCCTTTGGGTGATAGGTATGTATTTCGTATTTTCTGCTGGAATGTTGAATCGATTTTTTGTTACGCTATATGGATTCCTTTTCTGGATTGA

Network for GWHGAAZE026237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00903.26	Glyoxalase	166	322	2.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00457	HPD, hppD	Metabolic pathways	map01100
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0009072	biological_process	aromatic amino acid family metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003868	molecular_function	4-hydroxyphenylpyruvate dioxygenase activity
GO:0016701	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.758
	SRR3591706	second leaf	21.061
	SRR3591707	mature leaf	26.578
	SRR3591708	Shoot apex	22.791
	SRR3591709	Stem	37.172
	SRR3591710	White floral bud	372.403
	SRR3591711	White flower	435.817
	SRR3591712	Green floral bud	84.789
	SRR3591713	Yellow flower	2160.029
SRP173429	SRR8316895	Juvenile bud stage	29.300
	SRR8316896	Juvenile bud stage	40.973
	SRR8316897	Juvenile bud stage	20.148
	SRR8316894	Third green stage	15.046
	SRR8316900	Third green stage	45.401
	SRR8316901	Third green stage	46.051
	SRR8316898	Complete white stage	129.626
	SRR8316899	Complete white stage	43.704
	SRR8316903	Complete white stage	254.837
	SRR8316902	Silver flowering stage	233.623
	SRR8316904	Silver flowering stage	296.918
	SRR8316905	Silver flowering stage	186.614
	SRR8316906	Gold flowering stage	653.054
	SRR8316907	Gold flowering stage	685.684
	SRR8316908	Gold flowering stage	562.252
SRP132670	SRR6706286	Control	197.530
	SRR6706287	Light intensity 50%	163.514
	SRR6706288	Light intensity 20%	128.834
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.571
	CNS0095593	Slightly white alabastrum(diploid) 2	22.276
	CNS0095594	Slightly white alabastrum(diploid) 3	34.584
	CNS0095595	Whole white alabastrum(diploid) 2	22.723
	CNS0095596	Whole white alabastrum(diploid) 3	21.862
	CNS0095597	Whole white alabastrum(diploid) 4	31.422
	CNS0095598	Silvery flower (diploied) 1	197.984
	CNS0095599	Silvery flower (diploied) 2	221.081
	CNS0095600	Silvery flower (diploied) 3	924.068
	CNS0095601	Golden flower (diploid) 1	474.982
	CNS0095602	Golden flower (diploid) 2	1402.555
	CNS0095603	Golden flower (diploid) 3	1296.384
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.845
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.542
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.778
	CNS0095610	Silvery flower (tetraploid) 1	661.990
	CNS0095611	Silvery flower (tetraploid) 2	906.849
	CNS0095612	Silvery flower (tetraploid) 3	705.220
	CNS0095613	Golden flower (tetraploid) 1	1096.067
	CNS0095614	Golden flower (tetraploid) 2	957.791
	CNS0095615	Golden flower (tetraploid) 3	3125.351
CRA001975	CRR073297	Stem 1	76.035
	CRR073298	Stem 2	66.532
	CRR073299	Stem 3	73.849
	CRR073300	Leaf 1	56.349
	CRR073301	Leaf 2	54.683
	CRR073302	Leaf 3	52.139
	CRR073303	Juvenile bud 1	48.548
	CRR073304	Juvenile bud 2	100.353
	CRR073305	Juvenile bud 3	66.347
	CRR073306	Third green 1	535.213
	CRR073307	Third green 2	419.323
	CRR073308	Third green 3	366.910
	CRR073309	Second white 1	493.089
	CRR073310	Second white 2	508.132
	CRR073311	Second white 3	431.060
	CRR073312	Silver flowering 1	642.980
	CRR073313	Silver flowering 2	630.732
	CRR073314	Silver flowering 3	861.972
	CRR073315	Gold flowering 1	42.568
	CRR073316	Gold flowering 2	63.494
	CRR073317	Gold flowering 3	48.595
	CRR073318	Tawny withering 1	47.348
	CRR073319	Tawny withering 2	36.374
	CRR073320	Tawny withering 3	29.440