Detail information of GWHGAAZE026238


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAF74636.15.20333E-17hydroxyphenylpyruvate dioxygenase [Coptis japonica var. dissecta]
Swissprottr|P93836|HPPD_ARATH4E-104-hydroxyphenylpyruvate dioxygenase
trEMBLtr|A7BG64|A7BG64_COPJA2E-174-hydroxyphenylpyruvate dioxygenase {ECO:0000256|PIRNR:PIRNR009283}
TAIR10AT1G06570.10.000007phytoene desaturation 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene800400800534+
GWHAAZE00000008mRNA800400800534+
GWHAAZE00000008exon800400800534+
GWHAAZE00000008CDS800400800534+
Transcript Sequence

Network for GWHGAAZE026238

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00457HPD, hppD Metabolic pathways map01100
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.642
SRR3591706second leaf11.081
SRR3591707mature leaf17.785
SRR3591708Shoot apex11.708
SRR3591709Stem26.934
SRR3591710White floral bud209.646
SRR3591711White flower286.902
SRR3591712Green floral bud64.917
SRR3591713Yellow flower1340.805
SRP173429 SRR8316895Juvenile bud stage 6.021
SRR8316896Juvenile bud stage 7.091
SRR8316897Juvenile bud stage 8.328
SRR8316894Third green stage 4.573
SRR8316900Third green stage 10.517
SRR8316901Third green stage 13.693
SRR8316898Complete white stage 32.183
SRR8316899Complete white stage 8.180
SRR8316903Complete white stage 48.750
SRR8316902Silver flowering stage61.087
SRR8316904Silver flowering stage78.047
SRR8316905Silver flowering stage50.973
SRR8316906Gold flowering stage 150.870
SRR8316907Gold flowering stage 162.631
SRR8316908Gold flowering stage 141.797
SRP132670SRR6706286Control8.129
SRR6706287Light intensity 50%8.089
SRR6706288Light intensity 20%7.626
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.724
CNS0095593Slightly white alabastrum(diploid) 210.448
CNS0095594Slightly white alabastrum(diploid) 318.882
CNS0095595Whole white alabastrum(diploid) 26.683
CNS0095596Whole white alabastrum(diploid) 314.027
CNS0095597Whole white alabastrum(diploid) 414.661
CNS0095598Silvery flower (diploied) 1131.641
CNS0095599Silvery flower (diploied) 2129.441
CNS0095600Silvery flower (diploied) 3194.551
CNS0095601Golden flower (diploid) 1241.224
CNS0095602Golden flower (diploid) 2284.055
CNS0095603Golden flower (diploid) 3254.657
CNS0095604Slightly white alabastrum(tetraploid) 19.570
CNS0095605Slightly white alabastrum(tetraploid) 29.616
CNS0095606Slightly white alabastrum(tetraploid) 312.876
CNS0095607Whole white alabastrum(tetraploid) 110.870
CNS0095608Whole white alabastrum(tetraploid) 211.253
CNS0095609Whole white alabastrum(tetraploid) 357.500
CNS0095610Silvery flower (tetraploid) 1389.420
CNS0095611Silvery flower (tetraploid) 2180.791
CNS0095612Silvery flower (tetraploid) 3168.447
CNS0095613Golden flower (tetraploid) 1884.948
CNS0095614Golden flower (tetraploid) 2600.691
CNS0095615Golden flower (tetraploid) 3510.091
CRA001975CRR073297Stem 13.707
CRR073298Stem 25.011
CRR073299Stem 33.953
CRR073300Leaf 13.933
CRR073301Leaf 22.840
CRR073302Leaf 33.476
CRR073303Juvenile bud 12.579
CRR073304Juvenile bud 24.166
CRR073305Juvenile bud 33.673
CRR073306Third green 123.845
CRR073307Third green 216.009
CRR073308Third green 318.129
CRR073309Second white 131.217
CRR073310Second white 233.670
CRR073311Second white 332.619
CRR073312Silver flowering 145.984
CRR073313Silver flowering 230.067
CRR073314Silver flowering 352.414
CRR073315Gold flowering 11.987
CRR073316Gold flowering 22.074
CRR073317Gold flowering 31.832
CRR073318Tawny withering 14.245
CRR073319Tawny withering 22.194
CRR073320Tawny withering 31.866