Gene detail

Detail information of GWHGAAZE026242

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07213.1	0	unnamed protein product [Coffea canephora]
COG	YP_001659897.1	2E-66	cytochrome P450
Swissprot	tr\|Q949P1\|ABAH1_ARATH	0	Abscisic acid 8'-hydroxylase 1
trEMBL	tr\|A0A068UHZ2\|A0A068UHZ2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_25 {ECO:0000313\|EMBL:CDP07213.1}
TAIR10	AT4G19230.1	0	cytochrome P450, family 707, subfamily A, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	988760	991041	+
GWHAAZE00000008	mRNA	988760	991041	+
GWHAAZE00000008	exon	988760	988962	+
GWHAAZE00000008	exon	989067	989385	+
GWHAAZE00000008	exon	989593	989979	+
GWHAAZE00000008	exon	990134	990317	+
GWHAAZE00000008	exon	990430	990536	+
GWHAAZE00000008	exon	990681	990799	+
GWHAAZE00000008	exon	990942	991041	+
GWHAAZE00000008	CDS	988760	988962	+
GWHAAZE00000008	CDS	989067	989385	+
GWHAAZE00000008	CDS	989593	989979	+
GWHAAZE00000008	CDS	990134	990317	+
GWHAAZE00000008	CDS	990430	990536	+
GWHAAZE00000008	CDS	990681	990799	+
GWHAAZE00000008	CDS	990942	991041	+

Transcript Sequence
>GWHTAAZE026276 ATGGAGTTAACAACAATTTTGTGCTCCTTTGCTTTCATTTTCTTTATCTATCTCCTCCACTCTCTCCTCAAATTAGCCGGCTCAGGCCGCAGTGGCCGGAATTTGCCCCTCCCTCCGGGGACTATGGGGTGGCCTTACATCGGAGAAACCTTCCAACTCTACTCAAATAACCCAAATGTGTTCTTTGCCTCAAAAGTTAAAAAGTTTGGTTCTATTTTCAAGACTCACATATTGGGGTGTCCTTGTGTGATGATTTCGAGCCCCGAGGCTGCTAAGCTTGTACTCGTGACGAAAGCCAATCTCTTTAAGCCTACATTTCCGGCTAGTAAAGAGAGGATGTTGGGAAAACAAGCAATTTTCTTTCACCAAGGAGATTATCACACCAAATTGAGAAGGATTGTTCTTCGATCTTTCATGCCTGAAGCAATCAGAAGGATCGTGCCCGACGTTGAATCCATAGCCATTGATTCTCTGCGGTCGTTCGAAGGACGATTGATCAACACTTTCCAAGAAATGAAAACATTCACATTCAACGTCGCCTTACTTTCCATATTCGGAAAGGACGAGATTCTATACAGAGAAGATCTCAAAAGGTGCTACTACATTCTCGAAAAAGGTTACAATTCTATGCCCATTAATCTACCCGGTACGCTCTTCCACAAATCAATGAAGGCGCGAAAAGAACTGGCTCAAATTGTCGCAAAAATCCTCTCACTAAGAAGAGAAATGAACGAGGATCGACACGATTTGCTAGGGTCATTCATGGGTGACAAAGAAGGCCTCACGGACGAACAAATCGCCGACAACATAATTGGTGTCATCTTCGCGGCTAGGGATACTACGGCAAGTGTCATAACGTGGATCGTCAAGTACCTAGGCGAAAACCCGAGTGTTCTACAAGCTGTCACGAAAGAGCAAGAGGCAATATTGAAGGAAAAGGCGGAGTGTAGTGAAGAAAATAACAGTAAGGCTTTGACTTGGGCAGATACCAAGAAGATGCCTTTAACTACAAGGGTTATTCAAGAAACACTCAGAGTTGCTTCAATCCTATCTTTCACATTTAGAGAAGCGGTTGAAGATGTTGAATTTGAAGGATACTTTATACCAAAAGGATGGAAAGTTTTACCCCTCTTCAGAAACATTCACCACAGTGCAGATAATTTTGCAGAACCAGAGAAGTTTGATCCATCAAGATTTGAGGTTGCACCAAAGCCCAATACATTTATGCCATTTGGCAATGGGACCCACTCATGTCCAGGGAATGAGCTAGCTAAATTGGAGATTTTGGTCTTTATACATCATTTGACTACGAAGTACAGGTGGTCTATGGTGGGCCCACAAAATGGAATTCAGTATGCCCCTTTTGCCCTTCCCCAAAATGGGTTACCCATTAAACTCTCTCTCAAAACACAGTCATAA

Network for GWHGAAZE026242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	38	444	2.70E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09843	CYP707A	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.909
	SRR3591706	second leaf	0.715
	SRR3591707	mature leaf	1.609
	SRR3591708	Shoot apex	0.816
	SRR3591709	Stem	4.762
	SRR3591710	White floral bud	4.265
	SRR3591711	White flower	3.690
	SRR3591712	Green floral bud	0.833
	SRR3591713	Yellow flower	3.880
SRP173429	SRR8316895	Juvenile bud stage	0.484
	SRR8316896	Juvenile bud stage	0.715
	SRR8316897	Juvenile bud stage	2.085
	SRR8316894	Third green stage	0.305
	SRR8316900	Third green stage	0.596
	SRR8316901	Third green stage	0.663
	SRR8316898	Complete white stage	0.808
	SRR8316899	Complete white stage	1.960
	SRR8316903	Complete white stage	1.248
	SRR8316902	Silver flowering stage	7.391
	SRR8316904	Silver flowering stage	3.705
	SRR8316905	Silver flowering stage	0.991
	SRR8316906	Gold flowering stage	8.992
	SRR8316907	Gold flowering stage	4.616
	SRR8316908	Gold flowering stage	21.388
SRP132670	SRR6706286	Control	1.368
	SRR6706287	Light intensity 50%	1.351
	SRR6706288	Light intensity 20%	1.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.965
	CNS0095593	Slightly white alabastrum(diploid) 2	0.533
	CNS0095594	Slightly white alabastrum(diploid) 3	1.175
	CNS0095595	Whole white alabastrum(diploid) 2	0.531
	CNS0095596	Whole white alabastrum(diploid) 3	0.184
	CNS0095597	Whole white alabastrum(diploid) 4	1.229
	CNS0095598	Silvery flower (diploied) 1	1.756
	CNS0095599	Silvery flower (diploied) 2	0.659
	CNS0095600	Silvery flower (diploied) 3	1.582
	CNS0095601	Golden flower (diploid) 1	1.030
	CNS0095602	Golden flower (diploid) 2	1.608
	CNS0095603	Golden flower (diploid) 3	1.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.226
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.056
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.211
	CNS0095610	Silvery flower (tetraploid) 1	0.569
	CNS0095611	Silvery flower (tetraploid) 2	0.172
	CNS0095612	Silvery flower (tetraploid) 3	0.568
	CNS0095613	Golden flower (tetraploid) 1	0.379
	CNS0095614	Golden flower (tetraploid) 2	3.301
	CNS0095615	Golden flower (tetraploid) 3	0.016
CRA001975	CRR073297	Stem 1	1.543
	CRR073298	Stem 2	0.686
	CRR073299	Stem 3	0.582
	CRR073300	Leaf 1	1.091
	CRR073301	Leaf 2	1.203
	CRR073302	Leaf 3	1.466
	CRR073303	Juvenile bud 1	1.010
	CRR073304	Juvenile bud 2	0.441
	CRR073305	Juvenile bud 3	1.040
	CRR073306	Third green 1	0.111
	CRR073307	Third green 2	1.042
	CRR073308	Third green 3	1.996
	CRR073309	Second white 1	0.136
	CRR073310	Second white 2	2.355
	CRR073311	Second white 3	2.470
	CRR073312	Silver flowering 1	8.916
	CRR073313	Silver flowering 2	5.606
	CRR073314	Silver flowering 3	6.301
	CRR073315	Gold flowering 1	3.187
	CRR073316	Gold flowering 2	9.522
	CRR073317	Gold flowering 3	0.952
	CRR073318	Tawny withering 1	22.875
	CRR073319	Tawny withering 2	40.061
	CRR073320	Tawny withering 3	37.130