Gene detail

Detail information of GWHGAAZE026249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO66849.1	4.0879E-136	hypothetical protein CISIN_1g020099mg [Citrus sinensis]
COG	YP_002248350.1	9E-76	anthranilate synthase component I
Swissprot	tr\|Q9XJ29\|ASA2_ORYSJ	2E-131	Anthranilate synthase alpha subunit 2, chloroplastic (Precursor)
trEMBL	tr\|A0A067FL45\|A0A067FL45_CITSI	2E-136	Uncharacterized protein {ECO:0000313\|EMBL:KDO66850.1}
TAIR10	AT3G55870.1	4E-102	ADC synthase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	1272328	1274767	+
GWHAAZE00000008	mRNA	1272328	1274767	+
GWHAAZE00000008	exon	1272328	1272573	+
GWHAAZE00000008	exon	1272674	1272730	+
GWHAAZE00000008	exon	1272810	1272962	+
GWHAAZE00000008	exon	1273149	1273229	+
GWHAAZE00000008	exon	1274480	1274767	+
GWHAAZE00000008	CDS	1272328	1272573	+
GWHAAZE00000008	CDS	1272674	1272730	+
GWHAAZE00000008	CDS	1272810	1272962	+
GWHAAZE00000008	CDS	1273149	1273229	+
GWHAAZE00000008	CDS	1274480	1274767	+

Transcript Sequence
>GWHTAAZE026283 CCGAAGCTCTCTCCAGGTTCTGTGGATGTTTACACTGATCATTTCGGTACTTCATTGAAGCAGTCCAGCATGATAAGTGAAGAATACAAAAATAAAGTGCGACAGGCAAAAGAACGTATTTTTGCTGGAGACATTTTTCAGATTGTATTAAGTCAACGCTTTGAACGCCGAACATTTGCTGATCCATTTGAAGTCTACAGAGCATTGAGAGTTGTGAATCCAAGTCCATATATGACTTACTTGCAAGCTAGAGGGTGTATTCTAGTTGCTTCAAGCCCAGAAATTCTTACGCGTGTAGAAAAAAAAAAGATTGTTAATCGACCACTGGCTGGTACTATAAGACGAGGAAAGACTCCACAAGAAGATAAAATGCAAGAAATGAAGCTGCTAAATGATGAAAAGCAACGTGCTGAACACATTATGCTGGTTGATTTGGGACGAAATGATGTTGGAAAGGTCTCAAAATCTGGTTCTGTAAATGTGGAAAGGCTTATGGCTATCGAACGATACTCCCATGTGATGCACATCAGCTCAACGATCAGGGCCATGCAATTAATTGATGAGATGGAATCAATGAGACGGGGACCTTATAGTGGTGGTTTAGGAAGTATTTCCTTTTCTGGGGATATGGACATTGCGCTAGCTCTCAGGACCATTGTATTTCCTACTGGGACCGTTATGATACAATGTACTCATACAAGGATGCCGATAAGCAGAGAATGGGTGGCTTACTTACAAGCCGGTGCTGGGATTGTGGCCGACAGTGTTCCCGAGGATGAACAGACCGAATGCAAACAAGGCTGCTGGTCTTGCCCGTGCCATTGA

Network for GWHGAAZE026249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00425.19	Chorismate_bind	27	182	1.70E-48
PF00425.19	Chorismate_bind	181	265	3.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01657	trpE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Phenazine biosynthesis	map00405
		Quorum sensing	map02024
		Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.297
	SRR3591706	second leaf	8.871
	SRR3591707	mature leaf	4.408
	SRR3591708	Shoot apex	15.134
	SRR3591709	Stem	1.604
	SRR3591710	White floral bud	6.764
	SRR3591711	White flower	1.718
	SRR3591712	Green floral bud	20.629
	SRR3591713	Yellow flower	1.089
SRP173429	SRR8316895	Juvenile bud stage	6.911
	SRR8316896	Juvenile bud stage	10.387
	SRR8316897	Juvenile bud stage	2.904
	SRR8316894	Third green stage	4.767
	SRR8316900	Third green stage	15.660
	SRR8316901	Third green stage	16.848
	SRR8316898	Complete white stage	1.217
	SRR8316899	Complete white stage	16.034
	SRR8316903	Complete white stage	3.485
	SRR8316902	Silver flowering stage	0.159
	SRR8316904	Silver flowering stage	0.778
	SRR8316905	Silver flowering stage	0.396
	SRR8316906	Gold flowering stage	0.906
	SRR8316907	Gold flowering stage	0.175
	SRR8316908	Gold flowering stage	0.576
SRP132670	SRR6706286	Control	1.078
	SRR6706287	Light intensity 50%	0.914
	SRR6706288	Light intensity 20%	1.490
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.928
	CNS0095593	Slightly white alabastrum(diploid) 2	1.962
	CNS0095594	Slightly white alabastrum(diploid) 3	3.898
	CNS0095595	Whole white alabastrum(diploid) 2	1.943
	CNS0095596	Whole white alabastrum(diploid) 3	3.389
	CNS0095597	Whole white alabastrum(diploid) 4	2.494
	CNS0095598	Silvery flower (diploied) 1	0.533
	CNS0095599	Silvery flower (diploied) 2	2.230
	CNS0095600	Silvery flower (diploied) 3	1.850
	CNS0095601	Golden flower (diploid) 1	0.533
	CNS0095602	Golden flower (diploid) 2	0.941
	CNS0095603	Golden flower (diploid) 3	1.891
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.758
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.531
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.288
	CNS0095610	Silvery flower (tetraploid) 1	0.352
	CNS0095611	Silvery flower (tetraploid) 2	0.735
	CNS0095612	Silvery flower (tetraploid) 3	0.277
	CNS0095613	Golden flower (tetraploid) 1	0.325
	CNS0095614	Golden flower (tetraploid) 2	0.817
	CNS0095615	Golden flower (tetraploid) 3	0.332
CRA001975	CRR073297	Stem 1	2.842
	CRR073298	Stem 2	3.655
	CRR073299	Stem 3	2.991
	CRR073300	Leaf 1	4.450
	CRR073301	Leaf 2	2.340
	CRR073302	Leaf 3	1.897
	CRR073303	Juvenile bud 1	1.728
	CRR073304	Juvenile bud 2	2.185
	CRR073305	Juvenile bud 3	1.691
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.112
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.068
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.006
	CRR073315	Gold flowering 1	0.392
	CRR073316	Gold flowering 2	0.872
	CRR073317	Gold flowering 3	0.417
	CRR073318	Tawny withering 1	0.654
	CRR073319	Tawny withering 2	0.251
	CRR073320	Tawny withering 3	0.000