Gene detail

Detail information of GWHGAAZE026258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265653.2	1.7826E-175	PREDICTED: beta-glucosidase 42 [Vitis vinifera]
COG	YP_529070.1	5E-84	putative retaining b-glycosidase
Swissprot	tr\|Q9FIW4\|BGL42_ARATH	1E-152	Beta-glucosidase 42
trEMBL	tr\|F6H7V7\|F6H7V7_VITVI	7E-176	Beta-glucosidase {ECO:0000256\|RuleBase:RU361175}
TAIR10	AT5G36890.1	4E-120	beta glucosidase 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	1441484	1447037	-
GWHAAZE00000008	mRNA	1441484	1447037	-
GWHAAZE00000008	exon	1446911	1447037	-
GWHAAZE00000008	exon	1445288	1445362	-
GWHAAZE00000008	exon	1444274	1444319	-
GWHAAZE00000008	exon	1443797	1444022	-
GWHAAZE00000008	exon	1442728	1442840	-
GWHAAZE00000008	exon	1442332	1442549	-
GWHAAZE00000008	exon	1442199	1442221	-
GWHAAZE00000008	exon	1441983	1442121	-
GWHAAZE00000008	exon	1441484	1441596	-
GWHAAZE00000008	CDS	1446911	1447037	-
GWHAAZE00000008	CDS	1445288	1445362	-
GWHAAZE00000008	CDS	1444274	1444319	-
GWHAAZE00000008	CDS	1443797	1444022	-
GWHAAZE00000008	CDS	1442728	1442840	-
GWHAAZE00000008	CDS	1442332	1442549	-
GWHAAZE00000008	CDS	1442199	1442221	-
GWHAAZE00000008	CDS	1441983	1442121	-
GWHAAZE00000008	CDS	1441484	1441596	-

Transcript Sequence
>GWHTAAZE026292 ATGAATGTACACCTGCTCTCATCATTCTTTATTCAAACTCCTCAAATACAGGAAGATATTGACCTTATTTCCAAGTTGGGATTTGGTGCTTATCGTTTTTCTCTGTCATGGTCTCGTATATTTCCTGATGGTTTGGGAACTAAAGTCAATGAGCAAGGGATCGCACACTACAATAATATCATTGATACTCTTTTGGATAAGGATTCACACAGAGCTCTCATTCCTCTTCACATAGTGGATCTGAGTTTGAAATATTTTGCTGTCTATGCAGAGACTTGCTTTGCCAGTTTTGGTGACAGAGTGAAGAAATGGATTACTATTAATGAGCCTCTGCAAACTGCAGTGAATGGATATTGTACTGGTATATATGCCCCTGGAAGACGTGAACATTCATTGACTGAACCATATTTGGTTGCGCACCATCAGCTCTTGGCACATGCTGAAACTGTTTCCATTTACAGAAACAATTTCAAGGACAAGCAAGGTGGTCAAATAGGTTTGGTTGTTGACTGCGAATGGGCTGAGGCATTATCAGATAAAATAGAAGACAAAAGGGCTGCTGCAAGCCTTGATTTTCAACTTGGATGGTATTTGGATCCAATATTTTATGGAGACTATCCTGAAGCTATGCGGGAAAGACTTGGAGACCGGCTTCCAAAGTTCTCTCAGAAAGATAAAGAGCTACTCCGTGATTCAGTAGACTTTCTTGGGTTGAATCACTATACCTCAAGGTTTGTTACTCATGGAGGAAGAGTGAACCAACAAGACAATGATTTTTATCAAGCTCAAGAGGTGGAGAGAATAGGAGGGGAGGTAATTGGTGAGAAGTTTGTTAATCAAAGATTTTATTATTATGCATGGCAGGCAGCATCACCGTGGCTTTACGTTGTTCCATGGGGTATACGCAAAGTTCTCAATTACATAGCAGAGAGATACAATAATCCCCCAATATACATTACTGAGAATGGTATGGACGATGAGGACAATGGCACGTCCCAGATCCACGACATGTTGGATGACAAATTGAGAGTTTCTTACTTTAAGGGGTACCTTGCTGCTGTTGCTCAGGCAATTAAGTAA

Network for GWHGAAZE026258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.19	Glyco_hydro_1	15	359	1.10E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01188	E3.2.1.21	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.276
	SRR3591706	second leaf	5.144
	SRR3591707	mature leaf	5.391
	SRR3591708	Shoot apex	4.953
	SRR3591709	Stem	7.256
	SRR3591710	White floral bud	6.065
	SRR3591711	White flower	10.162
	SRR3591712	Green floral bud	2.298
	SRR3591713	Yellow flower	5.263
SRP173429	SRR8316895	Juvenile bud stage	3.930
	SRR8316896	Juvenile bud stage	6.908
	SRR8316897	Juvenile bud stage	0.238
	SRR8316894	Third green stage	2.065
	SRR8316900	Third green stage	3.537
	SRR8316901	Third green stage	5.326
	SRR8316898	Complete white stage	1.815
	SRR8316899	Complete white stage	5.983
	SRR8316903	Complete white stage	2.260
	SRR8316902	Silver flowering stage	1.995
	SRR8316904	Silver flowering stage	3.206
	SRR8316905	Silver flowering stage	0.868
	SRR8316906	Gold flowering stage	4.255
	SRR8316907	Gold flowering stage	4.128
	SRR8316908	Gold flowering stage	3.030
SRP132670	SRR6706286	Control	4.138
	SRR6706287	Light intensity 50%	4.898
	SRR6706288	Light intensity 20%	5.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.524
	CNS0095593	Slightly white alabastrum(diploid) 2	3.758
	CNS0095594	Slightly white alabastrum(diploid) 3	4.001
	CNS0095595	Whole white alabastrum(diploid) 2	2.603
	CNS0095596	Whole white alabastrum(diploid) 3	3.652
	CNS0095597	Whole white alabastrum(diploid) 4	2.612
	CNS0095598	Silvery flower (diploied) 1	5.155
	CNS0095599	Silvery flower (diploied) 2	4.434
	CNS0095600	Silvery flower (diploied) 3	7.950
	CNS0095601	Golden flower (diploid) 1	6.757
	CNS0095602	Golden flower (diploid) 2	6.174
	CNS0095603	Golden flower (diploid) 3	6.104
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.522
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.675
	CNS0095610	Silvery flower (tetraploid) 1	10.049
	CNS0095611	Silvery flower (tetraploid) 2	8.773
	CNS0095612	Silvery flower (tetraploid) 3	7.345
	CNS0095613	Golden flower (tetraploid) 1	2.806
	CNS0095614	Golden flower (tetraploid) 2	6.460
	CNS0095615	Golden flower (tetraploid) 3	1.884
CRA001975	CRR073297	Stem 1	3.748
	CRR073298	Stem 2	3.632
	CRR073299	Stem 3	4.232
	CRR073300	Leaf 1	4.626
	CRR073301	Leaf 2	3.599
	CRR073302	Leaf 3	4.120
	CRR073303	Juvenile bud 1	4.373
	CRR073304	Juvenile bud 2	3.031
	CRR073305	Juvenile bud 3	3.626
	CRR073306	Third green 1	3.090
	CRR073307	Third green 2	1.718
	CRR073308	Third green 3	2.534
	CRR073309	Second white 1	3.140
	CRR073310	Second white 2	3.818
	CRR073311	Second white 3	2.445
	CRR073312	Silver flowering 1	0.778
	CRR073313	Silver flowering 2	0.598
	CRR073314	Silver flowering 3	1.915
	CRR073315	Gold flowering 1	2.562
	CRR073316	Gold flowering 2	3.568
	CRR073317	Gold flowering 3	2.043
	CRR073318	Tawny withering 1	3.238
	CRR073319	Tawny withering 2	2.977
	CRR073320	Tawny withering 3	4.889