Gene detail

Detail information of GWHGAAZE026276

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22236.1	2.606E-78	hypothetical protein JCGZ_26067 [Jatropha curcas]
COG	YP_004370109.1	0.00000002	RNP-1 like RNA-binding protein
Swissprot	tr\|O04319\|PABP6_ARATH	1E-11	Polyadenylate-binding protein 6
trEMBL	tr\|A0A067JEG3\|A0A067JEG3_JATCU	1E-78	Uncharacterized protein {ECO:0000313\|EMBL:KDP22236.1}
TAIR10	AT3G16380.1	1E-10	poly(A) binding protein 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	1874393	1877072	+
GWHAAZE00000008	mRNA	1874393	1877072	+
GWHAAZE00000008	exon	1874393	1874537	+
GWHAAZE00000008	exon	1874843	1874928	+
GWHAAZE00000008	exon	1875649	1875722	+
GWHAAZE00000008	exon	1875806	1875932	+
GWHAAZE00000008	exon	1876524	1877072	+
GWHAAZE00000008	CDS	1874393	1874537	+
GWHAAZE00000008	CDS	1874843	1874928	+
GWHAAZE00000008	CDS	1875649	1875722	+
GWHAAZE00000008	CDS	1875806	1875932	+
GWHAAZE00000008	CDS	1876524	1876808	+
GWHAAZE00000008	three_prime_UTR	1876809	1877072	+

Transcript Sequence
>GWHTAAZE026310 ATGGTTAATGAAGTAGGGCTTCCTGCTCTCATCATCTTGTGGGTTGGGGGTAAGCTACCTTTAGGGAGGGAAAAAGAGGAGGTGTGGCCATTCCCTAAGTTCACAAAATTGAGTGGCAGGCACAAAGGCTTCTCTAGTTCAAGAGGTGCCAACAACGTGGTCACTAGCATCAGAATCTTTCAGTGCTTGTGGGCTGGGACTCATTTTAACAGATTCTTCAGCATTGCCATGGACCCTAATAGTTTTATGGACGAGAAGTGCGAAAGTAGACTTTACATCGGCAACCTTGATCTGAGAATAACGGAAGCCTCTTTGATTAAGATGTTTTCTCCGTTTGGAGAGATTGTATCTGAGGATTTTCTATGGCATACTCGGGGACCAAAACGCGGAGCGCCACGTGGCTATGCTTTTGTTCAGTTTAGAAACAAAGAGGAAGCTAAATTGGCCAAGGAGAAGATGCACGGGAAGTTGGTTTGCGGCCGGCCTATGGTGGTCCGTCTTGCTAGTGAGAAATATCTAGCAGAAATGACCGAAAACTCCTCCACAAAAGCACCTGGTGAGGCAAGCAAATCAGCCCTTGCTGCTGGTGGGAGTTCGGGTCAAATGAGTCGAAGCGCTAAAATAGCTGCTATAAAGAACAAATTAAAGGCTATGGAGGAAGAGAACCGAGATACAAAGAAGCTGAAGCAATCTGACCCTTCATCTGTCAAAAGATAAGTTCCCTGCAGAAGAATTCTTATAATAGTTGTTACCTTTAGAACTAGTGAAGCTTAGTTATATTTTCATGTTTACGTAATACAAAAGTGTTGAAACATTATTTGTTGTGACATACATAAATCAGTGAGGTTTAGGTCATGTTTCCCTCATTGTCTTTAATTTGCTTTAAATTTCTAAGAGGACGTTTTGTTGTTTTAAAAATGCAATATTCTAATCCTCAGGGATTAGTCCAGCGATAGGAAGGACCTACTTAAGTGCCTCGTG

Network for GWHGAAZE026276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0277

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	91	163	5.30E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.760
	SRR3591706	second leaf	6.593
	SRR3591707	mature leaf	4.848
	SRR3591708	Shoot apex	8.945
	SRR3591709	Stem	7.534
	SRR3591710	White floral bud	8.061
	SRR3591711	White flower	8.454
	SRR3591712	Green floral bud	6.875
	SRR3591713	Yellow flower	7.467
SRP173429	SRR8316895	Juvenile bud stage	3.969
	SRR8316896	Juvenile bud stage	6.739
	SRR8316897	Juvenile bud stage	3.096
	SRR8316894	Third green stage	2.600
	SRR8316900	Third green stage	8.057
	SRR8316901	Third green stage	7.376
	SRR8316898	Complete white stage	3.549
	SRR8316899	Complete white stage	12.091
	SRR8316903	Complete white stage	5.812
	SRR8316902	Silver flowering stage	3.153
	SRR8316904	Silver flowering stage	3.247
	SRR8316905	Silver flowering stage	1.792
	SRR8316906	Gold flowering stage	6.112
	SRR8316907	Gold flowering stage	5.216
	SRR8316908	Gold flowering stage	4.614
SRP132670	SRR6706286	Control	7.326
	SRR6706287	Light intensity 50%	6.960
	SRR6706288	Light intensity 20%	7.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.545
	CNS0095593	Slightly white alabastrum(diploid) 2	7.631
	CNS0095594	Slightly white alabastrum(diploid) 3	8.567
	CNS0095595	Whole white alabastrum(diploid) 2	7.401
	CNS0095596	Whole white alabastrum(diploid) 3	6.094
	CNS0095597	Whole white alabastrum(diploid) 4	7.948
	CNS0095598	Silvery flower (diploied) 1	9.766
	CNS0095599	Silvery flower (diploied) 2	7.285
	CNS0095600	Silvery flower (diploied) 3	6.710
	CNS0095601	Golden flower (diploid) 1	12.591
	CNS0095602	Golden flower (diploid) 2	7.264
	CNS0095603	Golden flower (diploid) 3	7.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.602
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.243
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.876
	CNS0095610	Silvery flower (tetraploid) 1	9.596
	CNS0095611	Silvery flower (tetraploid) 2	8.537
	CNS0095612	Silvery flower (tetraploid) 3	5.164
	CNS0095613	Golden flower (tetraploid) 1	7.899
	CNS0095614	Golden flower (tetraploid) 2	8.150
	CNS0095615	Golden flower (tetraploid) 3	3.242
CRA001975	CRR073297	Stem 1	5.670
	CRR073298	Stem 2	5.760
	CRR073299	Stem 3	4.827
	CRR073300	Leaf 1	8.142
	CRR073301	Leaf 2	7.166
	CRR073302	Leaf 3	5.609
	CRR073303	Juvenile bud 1	4.721
	CRR073304	Juvenile bud 2	3.067
	CRR073305	Juvenile bud 3	3.695
	CRR073306	Third green 1	1.168
	CRR073307	Third green 2	1.699
	CRR073308	Third green 3	1.494
	CRR073309	Second white 1	1.587
	CRR073310	Second white 2	2.150
	CRR073311	Second white 3	1.436
	CRR073312	Silver flowering 1	0.272
	CRR073313	Silver flowering 2	0.785
	CRR073314	Silver flowering 3	0.634
	CRR073315	Gold flowering 1	4.439
	CRR073316	Gold flowering 2	4.297
	CRR073317	Gold flowering 3	2.669
	CRR073318	Tawny withering 1	7.122
	CRR073319	Tawny withering 2	9.279
	CRR073320	Tawny withering 3	7.312