Detail information of GWHGAAZE026281


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775347.12.1609E-170PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Nicotiana sylvestris]
COGYP_182596.18E-67fibrillarin
Swissprottr|Q94AH9|MD36A_ARATH3E-166Mediator of RNA polymerase II transcription subunit 36a
trEMBLtr|Q25C91|Q25C91_TOBAC8E-171Tobacco fibrillarin homolog {ECO:0000313|EMBL:BAE91898.1}
TAIR10AT4G25630.15E-130fibrillarin 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene19758861980792-
GWHAAZE00000008mRNA19758861980792-
GWHAAZE00000008exon19758861976062-
GWHAAZE00000008exon19765271976595-
GWHAAZE00000008exon19789171979093-
GWHAAZE00000008exon19791781979255-
GWHAAZE00000008exon19793821979477-
GWHAAZE00000008exon19801071980435-
GWHAAZE00000008exon19807711980792-
GWHAAZE00000008CDS19807711980792-
GWHAAZE00000008CDS19801071980435-
GWHAAZE00000008CDS19793821979477-
GWHAAZE00000008CDS19791781979255-
GWHAAZE00000008CDS19789171979093-
GWHAAZE00000008CDS19765271976595-
GWHAAZE00000008CDS19758861976062-
Transcript Sequence

Network for GWHGAAZE026281

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01269.18Fibrillarin793062.70E-110
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14563NOP1, FBL Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0006364biological_processrRNA processing
GO:0003723molecular_functionRNA binding
GO:0008168molecular_functionmethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf167.940
SRR3591706second leaf62.824
SRR3591707mature leaf44.351
SRR3591708Shoot apex263.555
SRR3591709Stem94.349
SRR3591710White floral bud96.494
SRR3591711White flower144.437
SRR3591712Green floral bud173.519
SRR3591713Yellow flower79.145
SRP173429 SRR8316895Juvenile bud stage 102.743
SRR8316896Juvenile bud stage 131.863
SRR8316897Juvenile bud stage 69.610
SRR8316894Third green stage 50.929
SRR8316900Third green stage 169.703
SRR8316901Third green stage 145.489
SRR8316898Complete white stage 25.329
SRR8316899Complete white stage 124.082
SRR8316903Complete white stage 44.111
SRR8316902Silver flowering stage68.224
SRR8316904Silver flowering stage55.206
SRR8316905Silver flowering stage23.842
SRR8316906Gold flowering stage 63.192
SRR8316907Gold flowering stage 65.091
SRR8316908Gold flowering stage 94.550
SRP132670SRR6706286Control126.935
SRR6706287Light intensity 50%138.537
SRR6706288Light intensity 20%150.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1157.259
CNS0095593Slightly white alabastrum(diploid) 2186.782
CNS0095594Slightly white alabastrum(diploid) 3141.080
CNS0095595Whole white alabastrum(diploid) 2132.541
CNS0095596Whole white alabastrum(diploid) 3137.201
CNS0095597Whole white alabastrum(diploid) 481.066
CNS0095598Silvery flower (diploied) 1103.036
CNS0095599Silvery flower (diploied) 271.417
CNS0095600Silvery flower (diploied) 364.836
CNS0095601Golden flower (diploid) 175.214
CNS0095602Golden flower (diploid) 254.737
CNS0095603Golden flower (diploid) 353.046
CNS0095604Slightly white alabastrum(tetraploid) 1146.891
CNS0095605Slightly white alabastrum(tetraploid) 2130.742
CNS0095606Slightly white alabastrum(tetraploid) 3262.949
CNS0095607Whole white alabastrum(tetraploid) 159.594
CNS0095608Whole white alabastrum(tetraploid) 249.112
CNS0095609Whole white alabastrum(tetraploid) 3174.529
CNS0095610Silvery flower (tetraploid) 183.963
CNS0095611Silvery flower (tetraploid) 262.272
CNS0095612Silvery flower (tetraploid) 349.077
CNS0095613Golden flower (tetraploid) 130.230
CNS0095614Golden flower (tetraploid) 261.074
CNS0095615Golden flower (tetraploid) 322.894
CRA001975CRR073297Stem 1146.420
CRR073298Stem 2149.961
CRR073299Stem 3150.453
CRR073300Leaf 1127.232
CRR073301Leaf 2131.328
CRR073302Leaf 3163.764
CRR073303Juvenile bud 1123.892
CRR073304Juvenile bud 265.193
CRR073305Juvenile bud 3121.181
CRR073306Third green 132.171
CRR073307Third green 229.212
CRR073308Third green 339.164
CRR073309Second white 141.605
CRR073310Second white 228.960
CRR073311Second white 324.800
CRR073312Silver flowering 119.643
CRR073313Silver flowering 224.518
CRR073314Silver flowering 311.992
CRR073315Gold flowering 164.898
CRR073316Gold flowering 274.470
CRR073317Gold flowering 371.316
CRR073318Tawny withering 1146.270
CRR073319Tawny withering 2108.313
CRR073320Tawny withering 3144.767