Detail information of GWHGAAZE026282


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG10538.13.67161E-85F-box CPR30 -like protein [Gossypium arboreum]
Swissprottr|Q8GXC7|FBK50_ARATH5E-28F-box/kelch-repeat protein At3g06240
trEMBLtr|A0A061EF68|A0A061EF68_THECC3E-85S locus F-box protein with the low allelic sequence polymorphism 1-S2 {ECO:0000313|EMBL:EOY03571.1}
TAIR10AT3G06240.12E-25F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene19991072000195-
GWHAAZE00000008mRNA19991072000195-
GWHAAZE00000008exon19991072000195-
GWHAAZE00000008CDS19991072000195-
Transcript Sequence

Network for GWHGAAZE026282

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box18460.00053
PF07734.14FBA_12073331.00E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.069
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.293
SRR8316896Juvenile bud stage 3.621
SRR8316897Juvenile bud stage 0.747
SRR8316894Third green stage 1.371
SRR8316900Third green stage 2.968
SRR8316901Third green stage 2.575
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.061
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.074
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.076
SRP132670SRR6706286Control0.682
SRR6706287Light intensity 50%0.306
SRR6706288Light intensity 20%0.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.552
CNS0095593Slightly white alabastrum(diploid) 21.388
CNS0095594Slightly white alabastrum(diploid) 33.362
CNS0095595Whole white alabastrum(diploid) 21.144
CNS0095596Whole white alabastrum(diploid) 32.050
CNS0095597Whole white alabastrum(diploid) 41.288
CNS0095598Silvery flower (diploied) 10.225
CNS0095599Silvery flower (diploied) 20.458
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.329
CNS0095603Golden flower (diploid) 30.118
CNS0095604Slightly white alabastrum(tetraploid) 13.904
CNS0095605Slightly white alabastrum(tetraploid) 24.315
CNS0095606Slightly white alabastrum(tetraploid) 30.063
CNS0095607Whole white alabastrum(tetraploid) 13.924
CNS0095608Whole white alabastrum(tetraploid) 21.529
CNS0095609Whole white alabastrum(tetraploid) 31.954
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.039
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.188
CRA001975CRR073297Stem 10.987
CRR073298Stem 21.224
CRR073299Stem 30.657
CRR073300Leaf 10.100
CRR073301Leaf 20.420
CRR073302Leaf 30.188
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.401
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.053