Gene detail

Detail information of GWHGAAZE026286

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758256.1	6.6649E-169	PREDICTED: SKP1-like protein 21 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q8LF97\|ASK21_ARATH	2E-127	SKP1-like protein 21
trEMBL	tr\|M1CXM6\|M1CXM6_SOLTU	5E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400076942}
TAIR10	AT3G61415.1	2E-84	SKP1-like 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2178471	2186610	+
GWHAAZE00000008	mRNA	2178471	2186610	+
GWHAAZE00000008	exon	2178471	2178506	+
GWHAAZE00000008	exon	2179732	2179953	+
GWHAAZE00000008	exon	2180133	2180324	+
GWHAAZE00000008	exon	2180701	2180779	+
GWHAAZE00000008	exon	2183973	2184076	+
GWHAAZE00000008	exon	2184219	2184394	+
GWHAAZE00000008	exon	2185278	2185411	+
GWHAAZE00000008	exon	2186594	2186610	+
GWHAAZE00000008	CDS	2178471	2178506	+
GWHAAZE00000008	CDS	2179732	2179953	+
GWHAAZE00000008	CDS	2180133	2180324	+
GWHAAZE00000008	CDS	2180701	2180779	+
GWHAAZE00000008	CDS	2183973	2184076	+
GWHAAZE00000008	CDS	2184219	2184394	+
GWHAAZE00000008	CDS	2185278	2185411	+
GWHAAZE00000008	CDS	2186594	2186610	+

Transcript Sequence
>GWHTAAZE026320 ATGTCAGAAGGTCCTATGGCAGTTGTCAAACCAGAGATGAAGTCTTACATCTGGCTCCAAACGGCTGATGGTTCAATCCAGCAAGTAGAGGAAGAGGTTGCGATGTTTTGCCCCATGATATGTCGAGAAGTACTTCAGACAGGCATGGGATCTTCAAAAAACTACGCCATAAAACTTCCTCAACGAGTGAATCCCGCTATCCTTGGCTTAATACTTGATTATTGCCGGTTTCATCAAGTACCAGGCCGCTCTAATAAGGAGCGGAAATTTTTTGATGAGAAGTTCATTCGGTTAGATACAAAAAAGTTATGTGAGTTAACATCGGCTGCTGATAGCCTTCAGTTGAGGCCTTTGGTTGACCTAACTAGCCGTGCACTTGCTCGAATGATTGAAGGCAAAACTCCTGAGGAAATACGCGAAACTTTTCATTTGCCTGATGATCTTACAGAGAATGTTGAGGTTGAAGAAGAGCGTGTGGATGAGCGCTCAGTTGATGATCTCTTGTCGTTTATAAATGGTGGCGAAGGAGATTCAAAAGGTGTTAGAGCGACTAAAAGTAAAAAGAAAAATAGGAGGAGAAAAGATCAAACAAGAGACTCCTCTTCGAACAATGAAAATGGAAACCATAAGAAGGAATTAAATATTTTCCCTTCTGTTTGGCAGATTGGTGAAGTTGATGATATGCCTAGTCCAAGTAGCATTTCAAAGTTGCAAGATCCTGCATCTCTTACCTTTTCACCTAAGCTTGATTTTGAGGATGGTGATATTGACGATGAGTTGGATCCTGCAATGAAGGAAGAACTTGACAGGGAAGTAGAGGATTTTGCTCGGAGATTGAACTCTGTTTGGCCAGAAAGAATGCAAGAAATTCTTTCCCTGGGTCAAGAAAGGAGGCTTCAACCAATTTCCGTGAATGGCAATGGTTCCTTGAAGAGATATACAGGTTTGGATCAAAGATAA

Network for GWHGAAZE026286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03931.16	Skp1_POZ	17	79	1.40E-05
PF01466.20	Skp1	117	156	1.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	SKP1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.473
	SRR3591706	second leaf	12.495
	SRR3591707	mature leaf	12.699
	SRR3591708	Shoot apex	18.387
	SRR3591709	Stem	15.121
	SRR3591710	White floral bud	25.041
	SRR3591711	White flower	18.715
	SRR3591712	Green floral bud	24.995
	SRR3591713	Yellow flower	18.936
SRP173429	SRR8316895	Juvenile bud stage	12.488
	SRR8316896	Juvenile bud stage	19.387
	SRR8316897	Juvenile bud stage	11.040
	SRR8316894	Third green stage	6.605
	SRR8316900	Third green stage	19.967
	SRR8316901	Third green stage	19.636
	SRR8316898	Complete white stage	8.556
	SRR8316899	Complete white stage	20.669
	SRR8316903	Complete white stage	11.248
	SRR8316902	Silver flowering stage	7.215
	SRR8316904	Silver flowering stage	11.733
	SRR8316905	Silver flowering stage	5.641
	SRR8316906	Gold flowering stage	16.042
	SRR8316907	Gold flowering stage	16.484
	SRR8316908	Gold flowering stage	15.656
SRP132670	SRR6706286	Control	12.301
	SRR6706287	Light intensity 50%	12.710
	SRR6706288	Light intensity 20%	12.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.638
	CNS0095593	Slightly white alabastrum(diploid) 2	20.109
	CNS0095594	Slightly white alabastrum(diploid) 3	21.890
	CNS0095595	Whole white alabastrum(diploid) 2	24.428
	CNS0095596	Whole white alabastrum(diploid) 3	21.905
	CNS0095597	Whole white alabastrum(diploid) 4	23.887
	CNS0095598	Silvery flower (diploied) 1	19.227
	CNS0095599	Silvery flower (diploied) 2	16.888
	CNS0095600	Silvery flower (diploied) 3	17.545
	CNS0095601	Golden flower (diploid) 1	13.663
	CNS0095602	Golden flower (diploid) 2	20.561
	CNS0095603	Golden flower (diploid) 3	19.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.400
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.964
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.942
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.246
	CNS0095610	Silvery flower (tetraploid) 1	12.833
	CNS0095611	Silvery flower (tetraploid) 2	19.532
	CNS0095612	Silvery flower (tetraploid) 3	17.792
	CNS0095613	Golden flower (tetraploid) 1	13.295
	CNS0095614	Golden flower (tetraploid) 2	16.194
	CNS0095615	Golden flower (tetraploid) 3	17.519
CRA001975	CRR073297	Stem 1	20.827
	CRR073298	Stem 2	18.405
	CRR073299	Stem 3	14.467
	CRR073300	Leaf 1	20.945
	CRR073301	Leaf 2	19.093
	CRR073302	Leaf 3	15.042
	CRR073303	Juvenile bud 1	19.067
	CRR073304	Juvenile bud 2	15.838
	CRR073305	Juvenile bud 3	19.098
	CRR073306	Third green 1	9.086
	CRR073307	Third green 2	6.995
	CRR073308	Third green 3	8.747
	CRR073309	Second white 1	12.750
	CRR073310	Second white 2	15.442
	CRR073311	Second white 3	15.118
	CRR073312	Silver flowering 1	18.788
	CRR073313	Silver flowering 2	20.855
	CRR073314	Silver flowering 3	15.755
	CRR073315	Gold flowering 1	10.821
	CRR073316	Gold flowering 2	13.361
	CRR073317	Gold flowering 3	10.560
	CRR073318	Tawny withering 1	14.448
	CRR073319	Tawny withering 2	15.860
	CRR073320	Tawny withering 3	16.984