Gene detail

Detail information of GWHGAAZE026290

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662714.1	2.3355E-131	PREDICTED: U-box domain-containing protein 32 isoform X3 [Vitis vinifera]
COG	YP_004863454.1	8E-24	serine/threonine protein kinase
Swissprot	tr\|Q94A51\|PUB32_ARATH	6E-97	U-box domain-containing protein 32
trEMBL	tr\|E0CUZ8\|E0CUZ8_VITVI	2E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22698.3}
TAIR10	AT3G49060.1	4E-84	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2243448	2245602	-
GWHAAZE00000008	mRNA	2243448	2245602	-
GWHAAZE00000008	exon	2243448	2244011	-
GWHAAZE00000008	exon	2245099	2245602	-
GWHAAZE00000008	CDS	2245099	2245602	-
GWHAAZE00000008	CDS	2243448	2244011	-

Transcript Sequence
>GWHTAAZE026324 ATGGAGGAGGTAAACAAAAGAAAAGCAATGGAAGAACTGTTGGAAAGACAAAGACAAGAATGCAAAAACATGAAGAATTGGCATGATCAATGCATAAAAGAACTCCAGATGGTCCGGAACCAAATTCCGAAGCTAGAGAGCCGAATAACAGTGTCTCATTGTACAGAGAAGGAGTTAGAGGAAAAGATCATCCAAGCAGTGGAACTCCTAATCTCTTTTAAGGAAAAACGGGACAAGATGCTGACGGACTGTAAAAAAGCAAATAGAGATGTTCTTGAACTAAGGAAATTAGTAGAAAAGGACACCAGGAGTTTATGCGGTCTACAGTTTAAGGTATTCTCATTCTTGGAGATAATTGAGGGTACTCAAAATTTTGATCCCATGTTGAAGATTGGAGAAGGGAAATGTGGGAGTGTGTATAAGGGCCTTCTTTGCCAAGTGAAGGTAGCTATAAAGATGTTGCCTTGTCATGGGTCTGAAGGAATTTCGGACTTTGAGCATGAGGCAACGCTTTTGAGTAGGGTGAGGCATCCAAACCTCATAACTCTGATTGGAACTTGCCCAGAATCGGCCTCACTTGTTTACGAGTATCTCGAAAATGGCAGCCTTGAAGATTGTTTAGCTTGCCGAGGCAAAAATCCCCTTCCGTGGCAAACTCGAATAAAAATTGCTGTTGAAGTATGCTCTGCCCTCATCTTCCTCCACTTTAACAATCCTTGTATAGTTCATGGGAATTTGAAGTCCACCAACGTCCTCCTTGATCCAAACTTTGTAAGCAAACTTAGCGACTTTGGAATCTACCGATTGATTCCCCGTGATGAAAAAAACGATCCAACAGTTTCTGTCTATGTGGACCCGGAATTTCTCAAGACTGGGGAGCTTACTGTAGAATCTGATATCTACTCTTTTGGGATTGTATTAATGCGGATGCTAACTGGGAGGCCAGCCTTGGGAGTTGTGAATGATGTGAAGTGTGCAGTAAAAATGGGAACTTTGATGCGATTTTGGACATTTCGGCAGGGGATTGGCCACTTGAACAAGCAAAAAAGTTGGCTAACTTGGCATTGA

Network for GWHGAAZE026290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	130	314	1.50E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.366
	SRR3591706	second leaf	15.709
	SRR3591707	mature leaf	27.657
	SRR3591708	Shoot apex	11.296
	SRR3591709	Stem	23.945
	SRR3591710	White floral bud	36.856
	SRR3591711	White flower	28.593
	SRR3591712	Green floral bud	28.528
	SRR3591713	Yellow flower	14.730
SRP173429	SRR8316895	Juvenile bud stage	15.344
	SRR8316896	Juvenile bud stage	20.612
	SRR8316897	Juvenile bud stage	10.615
	SRR8316894	Third green stage	8.415
	SRR8316900	Third green stage	22.038
	SRR8316901	Third green stage	21.564
	SRR8316898	Complete white stage	11.658
	SRR8316899	Complete white stage	53.344
	SRR8316903	Complete white stage	25.654
	SRR8316902	Silver flowering stage	11.550
	SRR8316904	Silver flowering stage	15.165
	SRR8316905	Silver flowering stage	6.698
	SRR8316906	Gold flowering stage	16.367
	SRR8316907	Gold flowering stage	18.823
	SRR8316908	Gold flowering stage	23.032
SRP132670	SRR6706286	Control	17.125
	SRR6706287	Light intensity 50%	17.966
	SRR6706288	Light intensity 20%	18.611
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.784
	CNS0095593	Slightly white alabastrum(diploid) 2	13.899
	CNS0095594	Slightly white alabastrum(diploid) 3	14.717
	CNS0095595	Whole white alabastrum(diploid) 2	11.921
	CNS0095596	Whole white alabastrum(diploid) 3	12.083
	CNS0095597	Whole white alabastrum(diploid) 4	10.714
	CNS0095598	Silvery flower (diploied) 1	15.509
	CNS0095599	Silvery flower (diploied) 2	13.074
	CNS0095600	Silvery flower (diploied) 3	20.775
	CNS0095601	Golden flower (diploid) 1	10.532
	CNS0095602	Golden flower (diploid) 2	15.971
	CNS0095603	Golden flower (diploid) 3	15.758
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.626
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.447
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.880
	CNS0095610	Silvery flower (tetraploid) 1	35.704
	CNS0095611	Silvery flower (tetraploid) 2	29.800
	CNS0095612	Silvery flower (tetraploid) 3	17.567
	CNS0095613	Golden flower (tetraploid) 1	13.826
	CNS0095614	Golden flower (tetraploid) 2	24.733
	CNS0095615	Golden flower (tetraploid) 3	11.068
CRA001975	CRR073297	Stem 1	20.756
	CRR073298	Stem 2	16.234
	CRR073299	Stem 3	14.312
	CRR073300	Leaf 1	22.852
	CRR073301	Leaf 2	25.360
	CRR073302	Leaf 3	12.851
	CRR073303	Juvenile bud 1	17.216
	CRR073304	Juvenile bud 2	17.198
	CRR073305	Juvenile bud 3	21.793
	CRR073306	Third green 1	6.932
	CRR073307	Third green 2	9.358
	CRR073308	Third green 3	10.962
	CRR073309	Second white 1	2.441
	CRR073310	Second white 2	6.193
	CRR073311	Second white 3	4.373
	CRR073312	Silver flowering 1	1.241
	CRR073313	Silver flowering 2	1.461
	CRR073314	Silver flowering 3	0.933
	CRR073315	Gold flowering 1	17.289
	CRR073316	Gold flowering 2	19.639
	CRR073317	Gold flowering 3	4.187
	CRR073318	Tawny withering 1	16.159
	CRR073319	Tawny withering 2	13.128
	CRR073320	Tawny withering 3	16.537