Gene detail

Detail information of GWHGAAZE026295

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010044252.1	6.0352E-159	PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Eucalyptus grandis]
COG	YP_155422.1	4E-109	cysteinyl-tRNA synthetase
trEMBL	tr\|A0A059D6T9\|A0A059D6T9_EUCGR	2E-159	Uncharacterized protein {ECO:0000313\|EMBL:KCW86312.1}
TAIR10	AT5G38830.1	1E-119	Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2287847	2292366	-
GWHAAZE00000008	mRNA	2287847	2292366	-
GWHAAZE00000008	exon	2287847	2287972	-
GWHAAZE00000008	exon	2288163	2288279	-
GWHAAZE00000008	exon	2288360	2288605	-
GWHAAZE00000008	exon	2289531	2289812	-
GWHAAZE00000008	exon	2290301	2290471	-
GWHAAZE00000008	exon	2290858	2291019	-
GWHAAZE00000008	exon	2292006	2292069	-
GWHAAZE00000008	exon	2292167	2292366	-
GWHAAZE00000008	CDS	2292167	2292366	-
GWHAAZE00000008	CDS	2292006	2292069	-
GWHAAZE00000008	CDS	2290858	2291019	-
GWHAAZE00000008	CDS	2290301	2290471	-
GWHAAZE00000008	CDS	2289531	2289812	-
GWHAAZE00000008	CDS	2288360	2288605	-
GWHAAZE00000008	CDS	2288163	2288279	-
GWHAAZE00000008	CDS	2287847	2287972	-

Transcript Sequence
>GWHTAAZE026329 ATGGAAGAATTAGAGTTTACAAAGCAACAGTTGCATTCCTGGAAGGATTTCTACATATACAACACTATGAGTGGACATAAGGAGTTGTTTAAGACCATGGCTCCAGGAAAGGTGGGAATGTATTTCTGTGGTATAACGCCTTATGATTACAGCCACGTTGGCCACACCAGCTCCATGGTCGCTTTCGACGTTCTTTGCAGATACTTGCAGTACTTGGGATACAGTGTCACCTATGTCAGAAATTTCACGGATGTTGATGACAAGATTATTGGAAAAGCAAATGAACTCAACGAAGATATATTAACAGTCAGCTGCCGCTTTTCCCAGCTATTTCTTAATGAAATGACTGATCTTCAGTGTCTTCCTCCTACCCGTGAACCAAGGGTTTCTAGTCACATGGCCCAGATTATTAATATGATAAATGAGATTATTAATAATGATTGTGCATACATCGTTGATGGGAATGTGTACTACTCCCTTGCTAAATGCAAAAATTATGGATGCTTGTCACGGCAGATACCTGAAGAACTGATGGCGGGCAACCGAGTTGATTTTGATCCCAACAAGCGAGATCAATCTGACTTTGCCTTGTGGAAGGTTGCAAAGCCGAGTGAACCAAGTTGGCCAAGCCCTTGGGGTCTTGGAAGACCGGGATGGCACATAGAGTGCAGTGCTATGAGTTCTCACTATCTTAGCTCGGAGTTTGACATTCATGGTGGTGGAATAGATTTGAAGTTTCCATATCATGAAAATGAGATTGCCCAGAGTTGGGCTGCCTGCCCTGAAAGCAAAGTCAAGTATTGGGCGCATGTTGTTAGTGTTACAAAAGATGGCAAGAAAATGTCCAAATCAGATGGAAACTACGTGACCATTGGCGGGACCTTGGAAGATTGTGAGGCGGCTGTATCGCAATATAGACTAGCAATCCTGGAGGAGGAGCAAAAAGATGTTCCAAAAGCAGCAGCAGGCTCTCAGATGATTACTGCCAAATCTCAACAATGCATAAAAAGGCTATGGACTGATTTCGAAACCAAAATGTCCGATGACTTGCAAACTACAGTCGTGTTGACCAGTGTCATTCTAGAACCCTTGAAGTTCATTAACAAAACTTTAAAGAATTTCAATAAGATGAATGGAGAAAAGCAACAACAACCATTGGCTTGGTCCTTGATACAAATAGAGAAAGAAGTGAAGCAAGTGTTGAAAATTCTTGGGTTGTTATCTCCTTTGAGCTATTTTGAGGAGAGAGACTTCACGAAGGCTGATGAGATAAGGAGAATTTTGGAAGCTAAGGACATTGCTCTCGCTGATGCCATCGGTGAGGACACCACTTGCTGGAGGCCTTGTGTACCTACTCTTCAAACCTAA

Network for GWHGAAZE026295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01406.20	tRNA-synt_1e	30	307	4.40E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01883	CARS, cysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006423	biological_process	cysteinyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0004817	molecular_function	cysteine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.026
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.119
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.237
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.746
	SRR8316896	Juvenile bud stage	1.375
	SRR8316897	Juvenile bud stage	0.720
	SRR8316894	Third green stage	0.485
	SRR8316900	Third green stage	0.597
	SRR8316901	Third green stage	0.439
	SRR8316898	Complete white stage	0.119
	SRR8316899	Complete white stage	0.131
	SRR8316903	Complete white stage	0.035
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.114
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.031
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.187
	SRR6706287	Light intensity 50%	0.271
	SRR6706288	Light intensity 20%	0.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.717
	CNS0095593	Slightly white alabastrum(diploid) 2	0.858
	CNS0095594	Slightly white alabastrum(diploid) 3	1.118
	CNS0095595	Whole white alabastrum(diploid) 2	0.991
	CNS0095596	Whole white alabastrum(diploid) 3	1.225
	CNS0095597	Whole white alabastrum(diploid) 4	0.520
	CNS0095598	Silvery flower (diploied) 1	0.260
	CNS0095599	Silvery flower (diploied) 2	0.563
	CNS0095600	Silvery flower (diploied) 3	0.155
	CNS0095601	Golden flower (diploid) 1	0.087
	CNS0095602	Golden flower (diploid) 2	0.190
	CNS0095603	Golden flower (diploid) 3	0.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.540
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.505
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.464
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.371
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.656
	CNS0095610	Silvery flower (tetraploid) 1	0.155
	CNS0095611	Silvery flower (tetraploid) 2	0.281
	CNS0095612	Silvery flower (tetraploid) 3	0.115
	CNS0095613	Golden flower (tetraploid) 1	0.190
	CNS0095614	Golden flower (tetraploid) 2	0.086
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.678
	CRR073298	Stem 2	0.652
	CRR073299	Stem 3	0.316
	CRR073300	Leaf 1	0.317
	CRR073301	Leaf 2	0.710
	CRR073302	Leaf 3	0.020
	CRR073303	Juvenile bud 1	0.265
	CRR073304	Juvenile bud 2	0.259
	CRR073305	Juvenile bud 3	0.643
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.128
	CRR073308	Third green 3	0.081
	CRR073309	Second white 1	0.186
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.013
	CRR073320	Tawny withering 3	0.000