Gene detail

Detail information of GWHGAAZE026309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05218.1	8.1479E-177	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M2Z5\|FBL53_ARATH	2E-149	F-box/LRR-repeat protein At3g48880
trEMBL	tr\|A0A068UC80\|A0A068UC80_COFCA	3E-177	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05218.1}
TAIR10	AT3G48880.2	1E-119	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2541382	2543548	+
GWHAAZE00000008	mRNA	2541382	2543548	+
GWHAAZE00000008	exon	2541382	2541740	+
GWHAAZE00000008	exon	2542993	2543548	+
GWHAAZE00000008	CDS	2541382	2541740	+
GWHAAZE00000008	CDS	2542993	2543548	+

Transcript Sequence
>GWHTAAZE026343 ATGGAAGATAGTGGGAACCTTGTGAGGAAATGGGAAGACCTAGATATCGATATGCTGGTGAAGATATTTCAGTTGTTTGAAATTTCTGAGTTGATCTCAGGCCTCGCGCAAGTTTGTAGCACATGGCGTTTGGCTGCTTGTGACCCTCTGCTATGGAAAACTCTCGATTTATCGGAAATGAAATCCAACTTCATTAAAATCCCATTAGAGCCATATGTTTATGTGGATTGTCAATCCGATAAGACGTTGACCCGGGTTTTAAAGATTTCTTTAAATCTCAGCCGTGGAAGTATATTGACCTTGATTTTCCATTTCAATCTGTACGTCAGTGATGACCAGTTGACTTACACTGCTGAAAGGTGCCCACAGCTCAGACGACTAGTTATGCCTGCATGGAACCGAATAAAAAAGACCGGTATATGTCGCGCTATTCGAATGTGGCAAGATCTCGAGTCCTTGACAATGCCGAGCATAGCCAATCCCCCTTACCTCATGGAAGAAATTGCCAAGAACTGCAAGAATTTCTCCGAGCTCAAAATTATGGGCCGGTGCGAGAGCTTCTTCGCATCTACTCTGGTCACGTGTCTCCCGAACTTGAAGGTCTTAAGCCTCCGTTGCTCTTTGCTCTTTAAGGACGCTCTTATCATAATCTTGGATGGATTAAAGCAACTAGAAGTACTCAACATATCTCATTGCCTTCTTGTCGAAGTCCCTCCACCGCCCGCACATAAAAAAGTCCTCGAACAAATTGACCAATCGATTCTAGACAAAGCGTCTCATTTAAAAAAGTTCTTGACTTGCATGGACGACTCTTGTGATATGTGTCAGCGGACTCGAAACGATGAGGGGATAATGAGGTGGTACAAGTATGATAGGCTTTGGAAAGTTGACGAGGTGAGATCACTTGCAGTTTGA

Network for GWHGAAZE026309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	18	57	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.757
	SRR3591706	second leaf	20.067
	SRR3591707	mature leaf	28.716
	SRR3591708	Shoot apex	28.582
	SRR3591709	Stem	29.554
	SRR3591710	White floral bud	30.665
	SRR3591711	White flower	32.018
	SRR3591712	Green floral bud	34.071
	SRR3591713	Yellow flower	23.145
SRP173429	SRR8316895	Juvenile bud stage	15.305
	SRR8316896	Juvenile bud stage	27.683
	SRR8316897	Juvenile bud stage	11.723
	SRR8316894	Third green stage	10.821
	SRR8316900	Third green stage	32.916
	SRR8316901	Third green stage	31.616
	SRR8316898	Complete white stage	11.005
	SRR8316899	Complete white stage	35.703
	SRR8316903	Complete white stage	22.324
	SRR8316902	Silver flowering stage	15.000
	SRR8316904	Silver flowering stage	21.032
	SRR8316905	Silver flowering stage	7.205
	SRR8316906	Gold flowering stage	32.132
	SRR8316907	Gold flowering stage	24.647
	SRR8316908	Gold flowering stage	33.846
SRP132670	SRR6706286	Control	26.162
	SRR6706287	Light intensity 50%	25.574
	SRR6706288	Light intensity 20%	28.408
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.202
	CNS0095593	Slightly white alabastrum(diploid) 2	35.132
	CNS0095594	Slightly white alabastrum(diploid) 3	33.544
	CNS0095595	Whole white alabastrum(diploid) 2	36.161
	CNS0095596	Whole white alabastrum(diploid) 3	29.231
	CNS0095597	Whole white alabastrum(diploid) 4	34.443
	CNS0095598	Silvery flower (diploied) 1	23.593
	CNS0095599	Silvery flower (diploied) 2	21.661
	CNS0095600	Silvery flower (diploied) 3	30.695
	CNS0095601	Golden flower (diploid) 1	25.064
	CNS0095602	Golden flower (diploid) 2	32.763
	CNS0095603	Golden flower (diploid) 3	33.448
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.175
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.147
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.882
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.036
	CNS0095610	Silvery flower (tetraploid) 1	27.833
	CNS0095611	Silvery flower (tetraploid) 2	31.636
	CNS0095612	Silvery flower (tetraploid) 3	29.151
	CNS0095613	Golden flower (tetraploid) 1	24.693
	CNS0095614	Golden flower (tetraploid) 2	28.206
	CNS0095615	Golden flower (tetraploid) 3	30.124
CRA001975	CRR073297	Stem 1	29.504
	CRR073298	Stem 2	34.356
	CRR073299	Stem 3	30.276
	CRR073300	Leaf 1	41.910
	CRR073301	Leaf 2	36.481
	CRR073302	Leaf 3	30.874
	CRR073303	Juvenile bud 1	37.882
	CRR073304	Juvenile bud 2	33.111
	CRR073305	Juvenile bud 3	26.665
	CRR073306	Third green 1	13.673
	CRR073307	Third green 2	15.795
	CRR073308	Third green 3	14.197
	CRR073309	Second white 1	16.963
	CRR073310	Second white 2	21.255
	CRR073311	Second white 3	16.000
	CRR073312	Silver flowering 1	14.110
	CRR073313	Silver flowering 2	15.489
	CRR073314	Silver flowering 3	14.698
	CRR073315	Gold flowering 1	14.911
	CRR073316	Gold flowering 2	13.899
	CRR073317	Gold flowering 3	18.038
	CRR073318	Tawny withering 1	21.320
	CRR073319	Tawny withering 2	28.247
	CRR073320	Tawny withering 3	26.443