Gene detail

Detail information of GWHGAAZE026318

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009606532.1	PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q0WV12\|ANL2_ARATH	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
trEMBL	tr\|A0A068UC91\|A0A068UC91_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05233.1}
TAIR10	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2637033	2644388	-
GWHAAZE00000008	mRNA	2637033	2644388	-
GWHAAZE00000008	exon	2637033	2637443	-
GWHAAZE00000008	exon	2638148	2638518	-
GWHAAZE00000008	exon	2639356	2639620	-
GWHAAZE00000008	exon	2642087	2642296	-
GWHAAZE00000008	exon	2642382	2642483	-
GWHAAZE00000008	exon	2642970	2643647	-
GWHAAZE00000008	exon	2643950	2644067	-
GWHAAZE00000008	exon	2644183	2644388	-
GWHAAZE00000008	CDS	2644183	2644388	-
GWHAAZE00000008	CDS	2643950	2644067	-
GWHAAZE00000008	CDS	2642970	2643647	-
GWHAAZE00000008	CDS	2642382	2642483	-
GWHAAZE00000008	CDS	2642087	2642296	-
GWHAAZE00000008	CDS	2639356	2639620	-
GWHAAZE00000008	CDS	2638148	2638518	-
GWHAAZE00000008	CDS	2637033	2637443	-

Transcript Sequence
>GWHTAAZE026352 ATGGAGGGTCTTGGTGAAATGGGTATGATAATGGAGAATTTTGACCCCAGTGGCGTGATGACAAGGATAAAGGAAGATGAGTATGAGAGCAGGTCTGGCAGTGATAACTTTGAAGGTGGATCAGGGGATGAACAGGACACTACTGCCAATAAGAGGAAAAAGAAATACCATAGACACACTCCCTATCAAATTCAAGAACTTGAAGCTTCCTTCAAGGAGAACCCTCATCCTGATGAGAAGGGCAGATTGGAACTTGGCAAGAAGCTAGGATTGGAAAGCAAGCAAGTGAAATTTTGGTTTCAGAATAGAAGAACACAAATGAAGACCCAAATCGAACGCCACGAGAATCTACTTCTCAAACAAGAAAACGATAAGCTCCGAGTTGAAAACATTGCAATCAAGGAAGCAATAAGGAGCCCAATTTGCAGCACTTGTGGCGGTCAAGCAATTCTTGGGGAAATATCTATAGAAGAGCACCACCTTAGAATAGAAAATGCCCGTTTAAGGGACGAACTCAATAGGGTATGTGTCCTTGCGAACAAATTCTTGGGCAAGCCCTTATCGTCTATAACGGGTCCCGTAGTCCCCCACACAATGTCGAACACTAGCTTGGAACTTGCGGTAGGATCAAGAAACGGGTTCAGTGGTTTTGGCCCCGTTGACTCAACATTGCCGATGGGTTTCGATTTTGGCATCAATGGGGTATCAAATGCTTTGAACATGGTGCCCCAGACCAGGCCAGTTGATGTACCAATTGAATCTTATTTACCTGAGCGTGCATTGGGGGCCATGAATGAGTTGTTGAAGCTTGCTCAAATTGATAATCCATTGTGGTTTAAAAGCTTTGATGGAGTTGGGGAGACTTTGAACCATGAAGAGTATTTGAGGACATTTCCTCCTTGTATTGGGCCGAAACCTAATGGTTTTACTACTGATGCCACGAGGGCTGTTGGAACGGTACTTGTTAATAGCTTGGCACTTGTAGAGATGTTGATGGACTCGAATCGATGGGCAGAAATGTTTCCGGGTATCATCGGAAGAACCTCCACTATCGATGTACTATCCAGTGGCATGGGTGGTACCAGAAACGGTGCTTTGCAACTGATGCAAGCGGAGATTCAAGTTATTTCACCATTGGTCCCGGTTCGTGCAGTGAAGTTTCTTCGGTACTGCAAGCAGCACGCAGAGGGGGTGTGGGCCGTGGTTGATGTGTCCATTCACATTCCAGAAAGTTCAAACGCACACTCGTCTGTGTATTACCGGAGGCTTCCTTCCGGTTGTATTGTGCAAGATATGCCAAATAGTTATCCTAAGGTCACTTGGATAGAACATTCAGAATATGATGAAGCTGTGGTCCATGATCTGTACCGACCGTTGCTGAGGTCTGGCATGGGCTTTGGTGCACAAAGGTGGCTTGCCACCTTGCAACGTCAGTGCGAGTGCTTGGCTGCCGTTATGTCCTCCACCGTCCCCAGTGAAGATAACCCTGGTCGTTTTCTTGAAGGAATTTTACATTATTACTCCCTTATTCCTAACACCATGCTTCCAAGTGTCGTGTCTTTAGGATACTTGCCTGTATTGATCACTCCTAACGGGAGGAGAAGCGTTGCAAAGCTGGCACAACGAATGACTCAAGACTTCTGTGCTGGGGTTTGTGCAACAGTGCACCAGTGGGAGGTTGTTCGAGTGGGAAGCATGGGTGAAGATGCTGTGAGGCTAATGACGCGCAAGGGTGGTGTTAATAATATCCCCGGTGAGCCCAACAGGGTTGTGAGTGCAACCATGTCTGTCTGGATGCCAGTTCAGCACCAGCATTTGTTCGAATTGCTCCAAAACGAACAGCTGAGGAGCCAGTGGGACTTTTTATCGAACGGTGGTCCAATGCAACAGGTTGTTCGGATTGCCAAAAGCCAGGATCACGGCAACTGTGTTTCTCTTCTACGTGCAAGCGCCACTGCAAACAATGCAAACTCAAACAACATGCTGATATTGCAAGAGACTTCGTCCAACTCTTCGGGATCACTCATAGTATATGCGGCTGTCGATATACCGGCAATGAACGTCGTGATGAATGGCGGAGATTCCGATTGCGTGGCTTTCCTCCCCTCTGGATTCTCAATAGTTGCCGACTGTTTTCCCGACTCCGGTGGTGACAACACCACCGATGGCGGCACATTGCCCAAGGAAGGTGGTGGCAGTGTCGGCAATGGCAATAGCCATGGGTCTTTACTAACTGTTGGATTCCAGATATTGGTGAATAGCCTCCCTGACGCCAGGCTGACGATGGAGTCGGTTGATACGGTAAATGCTCTTATATCTCGCACGGTTCAAGGGATCAAAGAGGCCCTTCACTGCAATTGA

Network for GWHGAAZE026318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	53	108	7.90E-19
PF01852.20	START	260	481	1.80E-48

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.666
	SRR3591706	second leaf	2.974
	SRR3591707	mature leaf	3.806
	SRR3591708	Shoot apex	5.953
	SRR3591709	Stem	0.506
	SRR3591710	White floral bud	4.858
	SRR3591711	White flower	3.999
	SRR3591712	Green floral bud	7.898
	SRR3591713	Yellow flower	1.430
SRP173429	SRR8316895	Juvenile bud stage	5.196
	SRR8316896	Juvenile bud stage	6.128
	SRR8316897	Juvenile bud stage	2.805
	SRR8316894	Third green stage	2.334
	SRR8316900	Third green stage	7.777
	SRR8316901	Third green stage	7.918
	SRR8316898	Complete white stage	1.450
	SRR8316899	Complete white stage	9.755
	SRR8316903	Complete white stage	3.326
	SRR8316902	Silver flowering stage	1.025
	SRR8316904	Silver flowering stage	1.607
	SRR8316905	Silver flowering stage	0.504
	SRR8316906	Gold flowering stage	2.269
	SRR8316907	Gold flowering stage	2.146
	SRR8316908	Gold flowering stage	2.280
SRP132670	SRR6706286	Control	6.313
	SRR6706287	Light intensity 50%	7.344
	SRR6706288	Light intensity 20%	8.690
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.099
	CNS0095593	Slightly white alabastrum(diploid) 2	1.711
	CNS0095594	Slightly white alabastrum(diploid) 3	1.179
	CNS0095595	Whole white alabastrum(diploid) 2	1.366
	CNS0095596	Whole white alabastrum(diploid) 3	1.267
	CNS0095597	Whole white alabastrum(diploid) 4	1.246
	CNS0095598	Silvery flower (diploied) 1	4.162
	CNS0095599	Silvery flower (diploied) 2	2.365
	CNS0095600	Silvery flower (diploied) 3	3.234
	CNS0095601	Golden flower (diploid) 1	2.828
	CNS0095602	Golden flower (diploid) 2	2.611
	CNS0095603	Golden flower (diploid) 3	2.466
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.994
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.488
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.108
	CNS0095610	Silvery flower (tetraploid) 1	3.383
	CNS0095611	Silvery flower (tetraploid) 2	4.538
	CNS0095612	Silvery flower (tetraploid) 3	1.505
	CNS0095613	Golden flower (tetraploid) 1	1.899
	CNS0095614	Golden flower (tetraploid) 2	2.214
	CNS0095615	Golden flower (tetraploid) 3	0.497
CRA001975	CRR073297	Stem 1	5.955
	CRR073298	Stem 2	5.751
	CRR073299	Stem 3	4.346
	CRR073300	Leaf 1	13.089
	CRR073301	Leaf 2	7.592
	CRR073302	Leaf 3	7.051
	CRR073303	Juvenile bud 1	10.493
	CRR073304	Juvenile bud 2	13.208
	CRR073305	Juvenile bud 3	9.743
	CRR073306	Third green 1	0.752
	CRR073307	Third green 2	1.035
	CRR073308	Third green 3	0.922
	CRR073309	Second white 1	0.354
	CRR073310	Second white 2	0.286
	CRR073311	Second white 3	0.573
	CRR073312	Silver flowering 1	0.246
	CRR073313	Silver flowering 2	0.266
	CRR073314	Silver flowering 3	0.452
	CRR073315	Gold flowering 1	5.198
	CRR073316	Gold flowering 2	4.538
	CRR073317	Gold flowering 3	4.184
	CRR073318	Tawny withering 1	1.165
	CRR073319	Tawny withering 2	2.031
	CRR073320	Tawny withering 3	0.444