Gene detail

Detail information of GWHGAAZE026328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279638.1	1.8885E-120	PREDICTED: F-box protein At4g00755-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8LG03\|FB345_ARATH	4E-81	F-box protein At4g00755
trEMBL	tr\|M1B4V4\|M1B4V4_SOLTU	1E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400037128}
TAIR10	AT4G00755.2	2E-67	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2813233	2818566	+
GWHAAZE00000008	mRNA	2813233	2818566	+
GWHAAZE00000008	exon	2813233	2813359	+
GWHAAZE00000008	exon	2816963	2817370	+
GWHAAZE00000008	exon	2817849	2817988	+
GWHAAZE00000008	exon	2818435	2818566	+
GWHAAZE00000008	CDS	2813233	2813359	+
GWHAAZE00000008	CDS	2816963	2817370	+
GWHAAZE00000008	CDS	2817849	2817988	+
GWHAAZE00000008	CDS	2818435	2818566	+

Transcript Sequence
>GWHTAAZE026362 ATGGAGGGTTATGTTGATTTCATACAATATCTTGGACCTGATATGTCTATAAAAATCATCATGTGCTTGGAAGACCCGGCTGATCTTGTCCGTGTCAGCACGGTATCAAGCTCCTGGAGACAATTTGTGATTGCAAATGGCCTCTGTAAGCTGCTCTGTTTAAGAATGTTCCCTGAAATATCGAGTGTTGCTCCTGTTATTGAGGCTATGATAGAACCTATAGAAGCTAGGTCCAAAAATTCTATAGAACAGCTGTTTCTAATGAGAGATCATCGAGTATATGCCTTTTTAGTTCGAGGCCTCTCCTCTTCAATAACAAGTGATTGCATAATGAAGGCCATTGGTGCATCTAGCACTGATAACTATCCTGAAGAAAGCATTCGAAATACATTGGAGCATGGTGATAGGGTTGAACATAGAGCTTCATACTGGTCGAGCAAAGGCGCAAGTAATCCGGCGGTTCCGGAGATATTAGTTTATAAGTTGATTGCAAATCTTTGTGTAATTACTGAAATTCACTTGCAGCCATTTCAAGCTAAGGCTGTGCGATTTCGAATGGGACATCCGAAATTTCAAATGGATTTTAATGGTGACCCAAGAAATGACTCTGAATCTGCGTTTTCTAATGATAAATTCATATGGACGTATACTTCACCAGAATTTCCAATGGCTCAGGAGAAGAAGTTGCAAAAGTTTGAGCTGCCAGAACCTGTTCTATGTATTGGGGGAATACTACAAATAGAGTTGTTGGGTAGGGTTCAAAGACAAGCAATGGATGGTTTATATTATATATGGTTAGTTCCTTAA

Network for GWHGAAZE026328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.805
	SRR3591706	second leaf	29.312
	SRR3591707	mature leaf	25.102
	SRR3591708	Shoot apex	36.757
	SRR3591709	Stem	50.881
	SRR3591710	White floral bud	32.003
	SRR3591711	White flower	31.215
	SRR3591712	Green floral bud	38.029
	SRR3591713	Yellow flower	28.781
SRP173429	SRR8316895	Juvenile bud stage	32.381
	SRR8316896	Juvenile bud stage	39.542
	SRR8316897	Juvenile bud stage	16.091
	SRR8316894	Third green stage	21.936
	SRR8316900	Third green stage	60.244
	SRR8316901	Third green stage	51.460
	SRR8316898	Complete white stage	22.115
	SRR8316899	Complete white stage	83.086
	SRR8316903	Complete white stage	31.582
	SRR8316902	Silver flowering stage	13.324
	SRR8316904	Silver flowering stage	26.318
	SRR8316905	Silver flowering stage	11.160
	SRR8316906	Gold flowering stage	34.826
	SRR8316907	Gold flowering stage	32.123
	SRR8316908	Gold flowering stage	33.197
SRP132670	SRR6706286	Control	34.716
	SRR6706287	Light intensity 50%	35.863
	SRR6706288	Light intensity 20%	37.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.598
	CNS0095593	Slightly white alabastrum(diploid) 2	36.343
	CNS0095594	Slightly white alabastrum(diploid) 3	35.739
	CNS0095595	Whole white alabastrum(diploid) 2	35.991
	CNS0095596	Whole white alabastrum(diploid) 3	38.011
	CNS0095597	Whole white alabastrum(diploid) 4	33.600
	CNS0095598	Silvery flower (diploied) 1	41.194
	CNS0095599	Silvery flower (diploied) 2	44.308
	CNS0095600	Silvery flower (diploied) 3	47.490
	CNS0095601	Golden flower (diploid) 1	37.328
	CNS0095602	Golden flower (diploid) 2	55.162
	CNS0095603	Golden flower (diploid) 3	51.343
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.949
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.877
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.922
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.481
	CNS0095610	Silvery flower (tetraploid) 1	49.933
	CNS0095611	Silvery flower (tetraploid) 2	58.906
	CNS0095612	Silvery flower (tetraploid) 3	42.336
	CNS0095613	Golden flower (tetraploid) 1	25.418
	CNS0095614	Golden flower (tetraploid) 2	41.013
	CNS0095615	Golden flower (tetraploid) 3	27.677
CRA001975	CRR073297	Stem 1	27.887
	CRR073298	Stem 2	27.492
	CRR073299	Stem 3	27.488
	CRR073300	Leaf 1	32.003
	CRR073301	Leaf 2	21.602
	CRR073302	Leaf 3	29.883
	CRR073303	Juvenile bud 1	35.294
	CRR073304	Juvenile bud 2	26.623
	CRR073305	Juvenile bud 3	31.315
	CRR073306	Third green 1	10.251
	CRR073307	Third green 2	11.049
	CRR073308	Third green 3	10.016
	CRR073309	Second white 1	9.896
	CRR073310	Second white 2	9.552
	CRR073311	Second white 3	7.357
	CRR073312	Silver flowering 1	6.549
	CRR073313	Silver flowering 2	8.771
	CRR073314	Silver flowering 3	4.562
	CRR073315	Gold flowering 1	15.115
	CRR073316	Gold flowering 2	22.314
	CRR073317	Gold flowering 3	16.382
	CRR073318	Tawny withering 1	29.040
	CRR073319	Tawny withering 2	18.934
	CRR073320	Tawny withering 3	28.239