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Detail information of GWHGAAZE026341
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_007218032.1
0
hypothetical protein PRUPE_ppa006002mg [Prunus persica]
COG
YP_007055144.1
9E-18
WD40 repeat-containing protein
Swissprot
tr|Q9FNZ1|C3H63_ARATH
0
Zinc finger CCCH domain-containing protein 63
trEMBL
tr|M5X176|M5X176_PRUPE
0
Uncharacterized protein {ECO:0000313|EMBL:EMJ19231.1}
TAIR10
AT5G51980.1
4E-163
Transducin/WD40 repeat-like superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
3046274
3055362
+
GWHAAZE00000008
mRNA
3046274
3055362
+
GWHAAZE00000008
exon
3046274
3046717
+
GWHAAZE00000008
exon
3047715
3047810
+
GWHAAZE00000008
exon
3049429
3049518
+
GWHAAZE00000008
exon
3049645
3049746
+
GWHAAZE00000008
exon
3050364
3050510
+
GWHAAZE00000008
exon
3050630
3050663
+
GWHAAZE00000008
exon
3050971
3051104
+
GWHAAZE00000008
exon
3051203
3051262
+
GWHAAZE00000008
exon
3054753
3054850
+
GWHAAZE00000008
exon
3055209
3055362
+
GWHAAZE00000008
CDS
3046274
3046717
+
GWHAAZE00000008
CDS
3047715
3047810
+
GWHAAZE00000008
CDS
3049429
3049518
+
GWHAAZE00000008
CDS
3049645
3049746
+
GWHAAZE00000008
CDS
3050364
3050510
+
GWHAAZE00000008
CDS
3050630
3050663
+
GWHAAZE00000008
CDS
3050971
3051104
+
GWHAAZE00000008
CDS
3051203
3051262
+
GWHAAZE00000008
CDS
3054753
3054850
+
GWHAAZE00000008
CDS
3055209
3055362
+
Transcript Sequence
>GWHTAAZE026375 ATGGATTTCAATGGCAACAAGCGCGTATTTAACCGACTTGGACCTTCAGTTGATAACAGAAATCAAAAGGTTTGTTATCATTGGCGGGCTGGGAGATGCTATAAGAATCCATGCCCTTATTTACACAGAGAATTGCCACTGCCACATCAGCAGCAGCAGCAGCCGCCACCGCCTATGAGCAATGGGGCTGCTTCGTCGAAAAGGCCTCTTGGGTTTTCGGAAGATCAGAATTTGCCGAGACGGAACCCTAATTTTAATAGCTCATCAAGTTGGGGGAGAGTTCAGGGTGGGGGTGTGGGGAGTAGAGTTGTGAGGAAGCAAGAGAAAGTTTGCAATTTTTGGGTTAATGGGAAGTGTCATTTTGGTGATGGGTGTAAGTTCTTGCATTCGTGGAGTACCGGCAGTTGTTTTTCGTTGTTGACGAAGCTCGAGGGGCACCAGAAGGTTGTTAGTGGAATTGCTCTACCATCTGGGTCTGACAAGCTATATACAGGGAGCACAGATGAGACTGTGAGGGTTTGGGACTGCCAATCTGGGCAGTGTACAGGGGTGATCAATATGGCTGGTGAAGTAGGTTATATGCTTAGTGAAGGACCATGGATATTTGTGGGTTTACCAAATGTCATCAAGGCATGGAATGCCCAAACCGCCACTGACCTGAGTCTTAGTGGACCTGTTGGACTAGTCTATGCCCTGGTTGTGGGTAATGATTTACTCTTTGCTGGTACACAGGATGGTACTATACTGGCATGGAAATTTAATGCGGCCACTAACTGCTTTGAACCAGCTGCATCACTTACGGGTCACACTCTAGCTGTTGTGACACTAGTTGTTGGTGGTAATAGGCTATATTCTGGTTCCATGGACCATTCCATTAAAGTTGGGTTTAAGTTGTACTTGGGGGGAAAAAAAGCGACTATTTTTCAGGTATGGAGCCTTGAAACTTTGCAGTGTATACAGACTCTAACAGATCATACTTCAGTTGTGATGTCTGTTCTTTGTTGGGAACAGTTTCTTTTATCTGCTTCACTGGACAAAACAATAAAGGTGTGGGTTGCTAGTGATAGTGGAAATTTGGAAGTAACATACACCCACAATGAAGAACATGGTGTTCTCACCCTCTGTGGGATGCATGATGCAGAAGCCAAGCCAGTCTTGCTGTGCTCTTGCAATGACAACTCTATCCGTGTCTATGACTTGCCAAGTTTTTCCGAGAGGGGCAAGCTATTCTCAAAACAGGAGGTTCGGTCCATACAGATCGGCCCGGGTGGTTTATTTTTTACCGGAGATGGAACAGGCGAAGTGAGAGTATGGACGTGGTTAGCTGAACCAACTCCAACTACAACTCCATCGGCTTGA
Network for GWHGAAZE026341
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00400.33
WD40
139
175
0.00041
PF00400.33
WD40
317
351
0.011
Protein Sequence
>GWHPAAZE026359 MDFNGNKRVFNRLGPSVDNRNQKVCYHWRAGRCYKNPCPYLHRELPLPHQQQQQPPPPMSNGAASSKRPLGFSEDQNLPRRNPNFNSSSSWGRVQGGGVGSRVVRKQEKVCNFWVNGKCHFGDGCKFLHSWSTGSCFSLLTKLEGHQKVVSGIALPSGSDKLYTGSTDETVRVWDCQSGQCTGVINMAGEVGYMLSEGPWIFVGLPNVIKAWNAQTATDLSLSGPVGLVYALVVGNDLLFAGTQDGTILAWKFNAATNCFEPAASLTGHTLAVVTLVVGGNRLYSGSMDHSIKVGFKLYLGGKKATIFQVWSLETLQCIQTLTDHTSVVMSVLCWEQFLLSASLDKTIKVWVASDSGNLEVTYTHNEEHGVLTLCGMHDAEAKPVLLCSCNDNSIRVYDLPSFSERGKLFSKQEVRSIQIGPGGLFFTGDGTGEVRVWTWLAEPTPTTTPSA
Gene family
Gene family
subfamily
Transcription Factors Family
C3H
Ubiquitin Family
DWD
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
GO:0046872
molecular_function
metal ion binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
30.264
SRR3591706
second leaf
18.003
SRR3591707
mature leaf
20.019
SRR3591708
Shoot apex
26.824
SRR3591709
Stem
30.709
SRR3591710
White floral bud
31.443
SRR3591711
White flower
38.696
SRR3591712
Green floral bud
33.241
SRR3591713
Yellow flower
43.839
SRP173429
SRR8316895
Juvenile bud stage
18.167
SRR8316896
Juvenile bud stage
22.713
SRR8316897
Juvenile bud stage
11.723
SRR8316894
Third green stage
9.184
SRR8316900
Third green stage
30.649
SRR8316901
Third green stage
28.808
SRR8316898
Complete white stage
13.607
SRR8316899
Complete white stage
38.159
SRR8316903
Complete white stage
19.257
SRR8316902
Silver flowering stage
14.500
SRR8316904
Silver flowering stage
19.304
SRR8316905
Silver flowering stage
9.061
SRR8316906
Gold flowering stage
42.019
SRR8316907
Gold flowering stage
36.766
SRR8316908
Gold flowering stage
37.630
SRP132670
SRR6706286
Control
29.798
SRR6706287
Light intensity 50%
31.488
SRR6706288
Light intensity 20%
34.659
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
15.570
CNS0095593
Slightly white alabastrum(diploid) 2
15.471
CNS0095594
Slightly white alabastrum(diploid) 3
15.463
CNS0095595
Whole white alabastrum(diploid) 2
16.978
CNS0095596
Whole white alabastrum(diploid) 3
14.079
CNS0095597
Whole white alabastrum(diploid) 4
14.696
CNS0095598
Silvery flower (diploied) 1
23.135
CNS0095599
Silvery flower (diploied) 2
19.476
CNS0095600
Silvery flower (diploied) 3
32.273
CNS0095601
Golden flower (diploid) 1
20.883
CNS0095602
Golden flower (diploid) 2
30.690
CNS0095603
Golden flower (diploid) 3
29.513
CNS0095604
Slightly white alabastrum(tetraploid) 1
23.226
CNS0095605
Slightly white alabastrum(tetraploid) 2
16.781
CNS0095606
Slightly white alabastrum(tetraploid) 3
42.163
CNS0095607
Whole white alabastrum(tetraploid) 1
11.948
CNS0095608
Whole white alabastrum(tetraploid) 2
10.688
CNS0095609
Whole white alabastrum(tetraploid) 3
29.733
CNS0095610
Silvery flower (tetraploid) 1
42.670
CNS0095611
Silvery flower (tetraploid) 2
33.796
CNS0095612
Silvery flower (tetraploid) 3
28.125
CNS0095613
Golden flower (tetraploid) 1
28.769
CNS0095614
Golden flower (tetraploid) 2
39.842
CNS0095615
Golden flower (tetraploid) 3
34.614
CRA001975
CRR073297
Stem 1
19.971
CRR073298
Stem 2
18.758
CRR073299
Stem 3
20.979
CRR073300
Leaf 1
23.266
CRR073301
Leaf 2
21.472
CRR073302
Leaf 3
21.810
CRR073303
Juvenile bud 1
21.253
CRR073304
Juvenile bud 2
21.802
CRR073305
Juvenile bud 3
23.797
CRR073306
Third green 1
12.113
CRR073307
Third green 2
9.216
CRR073308
Third green 3
11.404
CRR073309
Second white 1
20.288
CRR073310
Second white 2
22.533
CRR073311
Second white 3
19.851
CRR073312
Silver flowering 1
20.223
CRR073313
Silver flowering 2
23.235
CRR073314
Silver flowering 3
21.364
CRR073315
Gold flowering 1
13.719
CRR073316
Gold flowering 2
15.456
CRR073317
Gold flowering 3
10.927
CRR073318
Tawny withering 1
18.622
CRR073319
Tawny withering 2
18.892
CRR073320
Tawny withering 3
18.413