Gene detail

Detail information of GWHGAAZE026353

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002318262.1	Phosphoglucomutase family protein [Populus trichocarpa]
COG	YP_720925.1	phosphoglucomutase
Swissprot	tr\|Q9SCY0\|PGMP_ARATH	Phosphoglucomutase, chloroplastic (Precursor)
trEMBL	tr\|B9I4H0\|B9I4H0_POPTR	Phosphoglucomutase family protein {ECO:0000313\|EMBL:EEE96482.1}
TAIR10	AT5G51820.1	phosphoglucomutase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3242726	3256171	+
GWHAAZE00000008	mRNA	3242726	3256171	+
GWHAAZE00000008	exon	3242726	3242731	+
GWHAAZE00000008	exon	3242804	3242869	+
GWHAAZE00000008	exon	3243002	3243046	+
GWHAAZE00000008	exon	3243148	3243240	+
GWHAAZE00000008	exon	3243349	3243401	+
GWHAAZE00000008	exon	3245079	3245112	+
GWHAAZE00000008	exon	3245277	3245345	+
GWHAAZE00000008	exon	3246030	3246098	+
GWHAAZE00000008	exon	3247379	3247501	+
GWHAAZE00000008	exon	3247589	3247641	+
GWHAAZE00000008	exon	3250264	3250342	+
GWHAAZE00000008	exon	3250424	3250488	+
GWHAAZE00000008	exon	3250564	3250631	+
GWHAAZE00000008	exon	3253289	3253407	+
GWHAAZE00000008	exon	3253486	3253560	+
GWHAAZE00000008	exon	3253662	3253777	+
GWHAAZE00000008	exon	3254134	3254275	+
GWHAAZE00000008	exon	3254658	3254739	+
GWHAAZE00000008	exon	3254826	3254872	+
GWHAAZE00000008	exon	3255048	3255125	+
GWHAAZE00000008	exon	3255251	3255356	+
GWHAAZE00000008	exon	3256104	3256171	+
GWHAAZE00000008	CDS	3242726	3242731	+
GWHAAZE00000008	CDS	3242804	3242869	+
GWHAAZE00000008	CDS	3243002	3243046	+
GWHAAZE00000008	CDS	3243148	3243240	+
GWHAAZE00000008	CDS	3243349	3243401	+
GWHAAZE00000008	CDS	3245079	3245112	+
GWHAAZE00000008	CDS	3245277	3245345	+
GWHAAZE00000008	CDS	3246030	3246098	+
GWHAAZE00000008	CDS	3247379	3247501	+
GWHAAZE00000008	CDS	3247589	3247641	+
GWHAAZE00000008	CDS	3250264	3250342	+
GWHAAZE00000008	CDS	3250424	3250488	+
GWHAAZE00000008	CDS	3250564	3250631	+
GWHAAZE00000008	CDS	3253289	3253407	+
GWHAAZE00000008	CDS	3253486	3253560	+
GWHAAZE00000008	CDS	3253662	3253777	+
GWHAAZE00000008	CDS	3254134	3254275	+
GWHAAZE00000008	CDS	3254658	3254739	+
GWHAAZE00000008	CDS	3254826	3254872	+
GWHAAZE00000008	CDS	3255048	3255125	+
GWHAAZE00000008	CDS	3255251	3255356	+
GWHAAZE00000008	CDS	3256104	3256171	+

Transcript Sequence
>GWHTAAZE026387 ATGCCTGTTAATTCAGTTCCGACTAAGCCGATCGAAGGTCAAAAGACGGGGACCAGTGGTCTTAGAAAGAAGGTCAAAGCGTTTATGGAAGAGAATTACCTTGCCAATTGGATTCAGGCATTGTTTAATTCGTTGCCTCCTGAGGATTACAAAAATGGGTTGTTGGTGTTAGGAGGTGATGGTCGATATTTTAACCGAGAAGCTTCACAGATAATCATTAAAATTGCGGCTGGGAATGGTGTTGGCAAAATCTTGGTTGGCAAGGAAGGCATTATGTCAACACCTGCTGTTTCTGCTGCCAATGGTGGGTTTGTAATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGCATCAAGTTCAATTACAGCAGTGGCCAACCAGCACCTGAATCCATCACTGACAAGATTTACGGGAACACGCTTTCTATCTCTGAAATAAAGATGGCGGACATTCCGGATGTTGACCTCTGTCTTCTTGGAGTAACAAAATATGGGAACTTTAGTGTTGAAGTAGTTGACCCTGTTACTGACTACTTGGAGCTAATGGAGAATGTATTTGATTTTCCACTGATTAGAAGTCTTCTTTCACGGTCAGATTTCAGGTTTGTATTTGATGCAATGCACGCGGTTACGGGTGCTTATGCAAAACCTATCTTTGTGGAGAAGCTAGGAGCAAGTCTGGACTCAATTTCAAATGGAGTGCCTTTGGAAGATTTCGGTCATGGCCATCCGGATCCCAATCTTACATATGCCAAGGATTTGGTCGACATTATGTATGGCGAGAATGGACCTGATGTTGGAGCTGCAAGCGACGGTGATGGTGATAGAAACATGATTCTTGGTAGAGGATTTTTTGTTACTCCTTCAGACTCTGTTGCAATTATCGCAGCCAATGCACAAGAAGCCATTCCATACTTTCGGAATGGCCCCAAGGGTTTAGCACGATCTATGCCAACGAGTGGCGCTCTTGACCGTGTGGCTCAAAAGTTGAATGTTTCCTTTTTTGAGGTCCCCACTGGTTGGAAATTCTTTGGGAACTTGATGGATGCTGGAAAATTATCAATATGCGGGGAAGAAAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAGGATGGCATATGGGCTGTGTTAGCTTGGCTTTCAATTATTGCATATCGGAACAAGGACAAGAAGCCTGAGGATAAATTAATTTCCGTCTCTGACGTTGTCAAGGAGCATTGGGCCATTTATGGTCGGAATTACTTTTCCAGATATGACTATGAAGAGTGTGAGTCTGATGGAGCTAATAAAATGATAGAATATCTTAGGGATTTGATTTCTAAGAGCAAGACAGGTGACAAGTATGGGAGTTATGCCCTTCAATTTGCTGATGACTTCACATATACCGATCCTGTGGATGGAAGTGTGGTAACCAAGCAAGGTGTTCGGTTTGTTTTCACTGATGGATCAAGGATAATCTTTCGATTATCGGGAACTGGTTCGGCAGGTGCAACTGTTAGAATTTACATAGAACAGTTTGAGCCAGATGTCTCTAAACACGACTTGGATGCCCAAGTTGCTCTAAAACCATTGATAGATTTGGCACTGTCTGTATCAAAGCTAGAGGAGTTTACAGGAAGGCAAAAACCTACAGTCATCACATAG

Network for GWHGAAZE026353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02878.17	PGM_PMM_I	14	147	2.50E-30
PF02879.17	PGM_PMM_II	180	283	7.20E-13
PF02880.17	PGM_PMM_III	291	413	3.60E-29
PF00408.21	PGM_PMM_IV	474	526	3.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01835	pgm	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Purine metabolism	map00230
		Streptomycin biosynthesis	map00521

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0071704	biological_process	organic substance metabolic process
GO:0016868	molecular_function	intramolecular transferase activity, phosphotransferases
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.666
	SRR3591706	second leaf	73.376
	SRR3591707	mature leaf	52.275
	SRR3591708	Shoot apex	43.457
	SRR3591709	Stem	49.745
	SRR3591710	White floral bud	35.400
	SRR3591711	White flower	20.283
	SRR3591712	Green floral bud	59.216
	SRR3591713	Yellow flower	10.725
SRP173429	SRR8316895	Juvenile bud stage	22.848
	SRR8316896	Juvenile bud stage	30.052
	SRR8316897	Juvenile bud stage	19.906
	SRR8316894	Third green stage	20.713
	SRR8316900	Third green stage	112.006
	SRR8316901	Third green stage	93.564
	SRR8316898	Complete white stage	28.799
	SRR8316899	Complete white stage	120.511
	SRR8316903	Complete white stage	38.794
	SRR8316902	Silver flowering stage	4.283
	SRR8316904	Silver flowering stage	5.686
	SRR8316905	Silver flowering stage	3.379
	SRR8316906	Gold flowering stage	4.966
	SRR8316907	Gold flowering stage	4.738
	SRR8316908	Gold flowering stage	18.557
SRP132670	SRR6706286	Control	116.830
	SRR6706287	Light intensity 50%	121.754
	SRR6706288	Light intensity 20%	139.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.874
	CNS0095593	Slightly white alabastrum(diploid) 2	42.374
	CNS0095594	Slightly white alabastrum(diploid) 3	23.811
	CNS0095595	Whole white alabastrum(diploid) 2	53.275
	CNS0095596	Whole white alabastrum(diploid) 3	69.332
	CNS0095597	Whole white alabastrum(diploid) 4	66.736
	CNS0095598	Silvery flower (diploied) 1	17.834
	CNS0095599	Silvery flower (diploied) 2	21.546
	CNS0095600	Silvery flower (diploied) 3	10.990
	CNS0095601	Golden flower (diploid) 1	14.059
	CNS0095602	Golden flower (diploid) 2	8.561
	CNS0095603	Golden flower (diploid) 3	8.864
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.307
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.535
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	110.795
	CNS0095610	Silvery flower (tetraploid) 1	35.268
	CNS0095611	Silvery flower (tetraploid) 2	43.508
	CNS0095612	Silvery flower (tetraploid) 3	36.292
	CNS0095613	Golden flower (tetraploid) 1	14.254
	CNS0095614	Golden flower (tetraploid) 2	21.434
	CNS0095615	Golden flower (tetraploid) 3	13.603
CRA001975	CRR073297	Stem 1	52.547
	CRR073298	Stem 2	52.421
	CRR073299	Stem 3	45.855
	CRR073300	Leaf 1	138.477
	CRR073301	Leaf 2	109.960
	CRR073302	Leaf 3	98.699
	CRR073303	Juvenile bud 1	179.467
	CRR073304	Juvenile bud 2	138.423
	CRR073305	Juvenile bud 3	151.288
	CRR073306	Third green 1	17.167
	CRR073307	Third green 2	6.547
	CRR073308	Third green 3	9.710
	CRR073309	Second white 1	1.095
	CRR073310	Second white 2	1.991
	CRR073311	Second white 3	0.722
	CRR073312	Silver flowering 1	0.434
	CRR073313	Silver flowering 2	0.764
	CRR073314	Silver flowering 3	0.928
	CRR073315	Gold flowering 1	40.856
	CRR073316	Gold flowering 2	65.154
	CRR073317	Gold flowering 3	39.280
	CRR073318	Tawny withering 1	20.794
	CRR073319	Tawny withering 2	13.909
	CRR073320	Tawny withering 3	22.497