Gene detail

Detail information of GWHGAAZE026376

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101143.1	1.3579E-114	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1-like [Sesamum indicum]
Swissprot	tr\|Q9SE33\|RAR1_ARATH	3E-107	Cysteine and histidine-rich domain-containing protein RAR1
trEMBL	tr\|A0A061G0A5\|A0A061G0A5_THECC	9E-115	Binding,zinc ion binding isoform 1 {ECO:0000313\|EMBL:EOY22991.1}
TAIR10	AT5G51700.1	2E-85	protein binding;zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3566898	3570745	+
GWHAAZE00000008	mRNA	3566898	3570745	+
GWHAAZE00000008	exon	3566898	3566987	+
GWHAAZE00000008	exon	3568346	3568428	+
GWHAAZE00000008	exon	3569172	3569326	+
GWHAAZE00000008	exon	3569439	3569656	+
GWHAAZE00000008	exon	3570410	3570745	+
GWHAAZE00000008	CDS	3566898	3566987	+
GWHAAZE00000008	CDS	3568346	3568428	+
GWHAAZE00000008	CDS	3569172	3569326	+
GWHAAZE00000008	CDS	3569439	3569656	+
GWHAAZE00000008	CDS	3570410	3570505	+
GWHAAZE00000008	three_prime_UTR	3570506	3570745	+

Transcript Sequence
>GWHTAAZE026410 ATGGAGAAAGTTCGATGCCAGAGAATCGGCTGCAACGCCATGTTCACCGACGACGATAACCCCGAAGGCTCTTGTACTTATCACGATTCCCCATTATTTCATGATGGAATGAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCACGATTTCAGCTTATTTCTTGAAATTCCAGGTTGCAAGACAGGTAAACACACAATCGAAAAACCAGTGCTACCCCAGGTGGCTGCTACCCCAAAGATACCGATTCCCCCACCATCTTCTGCAACTAATTCATCAACAAAAGGAGATTGCTCTAGGTGCCGCCAAGGATTCTTTTGCTCAGACCATGGCTCTCAAGCTAAAGAAATGAATCCAATACTGCCAAACGCAGTAGCAGTTGAACCAGTGGAAACCATTACTGCTCCTGCCAAGAAGAAAGTTGATATAAACGAGCCTCAAATTTGCAAAAATAAGGGGTGCGGTCAAACTTTCAAAGAAAAGGACAATCATGACACTGCGTGTAATTACCATCCTGGGCCCGCTGTCTTCCATGACAGGATGAGAGGGTGGAAATGCTGTGACATTCATGTGAAGGAATTTGATGAGTTCATGAGTATACCGCCATGCGCAAAGGGATGGCACAATGCCGATCCAGTGTCGTAACGGAAAGTGCAAACCGGCAAAGCATATATTTAGGTGTTTTTGTTTTTGTTTTTGTTTTGCCATCCTTCTTCATGTGTGTTGGCACTGTTGTTACTTAAACTCCCAAATGCGAGTTTTTGTTTTGTTTTGGCCTTTGAGATGACAAGGGTATAATACTCAGATAATTTATTGGGATTTTTTTCTACATGACAGTGATGAGATTATTTATGAACGTATTAGTTTCATCTACTCGCTTAAATA

Network for GWHGAAZE026376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04968.13	CHORD	5	64	5.30E-23
PF04968.13	CHORD	147	207	3.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13458	RAR1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.746
	SRR3591706	second leaf	39.573
	SRR3591707	mature leaf	24.588
	SRR3591708	Shoot apex	58.094
	SRR3591709	Stem	55.182
	SRR3591710	White floral bud	37.747
	SRR3591711	White flower	48.058
	SRR3591712	Green floral bud	64.451
	SRR3591713	Yellow flower	49.022
SRP173429	SRR8316895	Juvenile bud stage	29.203
	SRR8316896	Juvenile bud stage	39.058
	SRR8316897	Juvenile bud stage	21.422
	SRR8316894	Third green stage	17.680
	SRR8316900	Third green stage	57.789
	SRR8316901	Third green stage	53.490
	SRR8316898	Complete white stage	18.691
	SRR8316899	Complete white stage	66.590
	SRR8316903	Complete white stage	31.103
	SRR8316902	Silver flowering stage	21.346
	SRR8316904	Silver flowering stage	26.171
	SRR8316905	Silver flowering stage	13.788
	SRR8316906	Gold flowering stage	48.348
	SRR8316907	Gold flowering stage	43.098
	SRR8316908	Gold flowering stage	53.710
SRP132670	SRR6706286	Control	85.398
	SRR6706287	Light intensity 50%	79.656
	SRR6706288	Light intensity 20%	83.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.154
	CNS0095593	Slightly white alabastrum(diploid) 2	67.951
	CNS0095594	Slightly white alabastrum(diploid) 3	53.069
	CNS0095595	Whole white alabastrum(diploid) 2	51.811
	CNS0095596	Whole white alabastrum(diploid) 3	44.362
	CNS0095597	Whole white alabastrum(diploid) 4	41.116
	CNS0095598	Silvery flower (diploied) 1	42.268
	CNS0095599	Silvery flower (diploied) 2	40.079
	CNS0095600	Silvery flower (diploied) 3	50.236
	CNS0095601	Golden flower (diploid) 1	37.407
	CNS0095602	Golden flower (diploid) 2	43.294
	CNS0095603	Golden flower (diploid) 3	41.854
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.551
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.316
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.992
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.449
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.589
	CNS0095610	Silvery flower (tetraploid) 1	69.996
	CNS0095611	Silvery flower (tetraploid) 2	57.473
	CNS0095612	Silvery flower (tetraploid) 3	52.629
	CNS0095613	Golden flower (tetraploid) 1	65.108
	CNS0095614	Golden flower (tetraploid) 2	69.762
	CNS0095615	Golden flower (tetraploid) 3	48.012
CRA001975	CRR073297	Stem 1	41.235
	CRR073298	Stem 2	40.866
	CRR073299	Stem 3	42.277
	CRR073300	Leaf 1	54.892
	CRR073301	Leaf 2	51.931
	CRR073302	Leaf 3	53.629
	CRR073303	Juvenile bud 1	59.505
	CRR073304	Juvenile bud 2	56.337
	CRR073305	Juvenile bud 3	65.444
	CRR073306	Third green 1	31.326
	CRR073307	Third green 2	34.888
	CRR073308	Third green 3	33.439
	CRR073309	Second white 1	37.572
	CRR073310	Second white 2	28.379
	CRR073311	Second white 3	25.881
	CRR073312	Silver flowering 1	22.661
	CRR073313	Silver flowering 2	24.052
	CRR073314	Silver flowering 3	22.444
	CRR073315	Gold flowering 1	16.473
	CRR073316	Gold flowering 2	23.497
	CRR073317	Gold flowering 3	14.958
	CRR073318	Tawny withering 1	61.660
	CRR073319	Tawny withering 2	47.351
	CRR073320	Tawny withering 3	62.468