Detail information of GWHGAAZE026381


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268371.10PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Vitis vinifera]
Swissprottr|Q9FGR0|CPSF1_ARATH0Cleavage and polyadenylation specificity factor subunit 1
trEMBLtr|M5X6F1|M5X6F1_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ21509.1}
TAIR10AT5G51660.10cleavage and polyadenylation specificity factor 160

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene36137853644093-
GWHAAZE00000008mRNA36137853644093-
GWHAAZE00000008exon36437683644093-
GWHAAZE00000008exon36427303642876-
GWHAAZE00000008exon36407263640879-
GWHAAZE00000008exon36397223639829-
GWHAAZE00000008exon36390403639192-
GWHAAZE00000008exon36377573637852-
GWHAAZE00000008exon36373653637417-
GWHAAZE00000008exon36350753635206-
GWHAAZE00000008exon36342943634345-
GWHAAZE00000008exon36340663634185-
GWHAAZE00000008exon36335213633655-
GWHAAZE00000008exon36325563632684-
GWHAAZE00000008exon36323123632389-
GWHAAZE00000008exon36305783630718-
GWHAAZE00000008exon36303883630482-
GWHAAZE00000008exon36257773625982-
GWHAAZE00000008exon36220313622815-
GWHAAZE00000008exon36197683619848-
GWHAAZE00000008exon36194343619511-
GWHAAZE00000008exon36181383618362-
GWHAAZE00000008exon36175583617689-
GWHAAZE00000008exon36172453617421-
GWHAAZE00000008exon36160873616272-
GWHAAZE00000008exon36152763615655-
GWHAAZE00000008exon36137853613899-
GWHAAZE00000008CDS36437683644093-
GWHAAZE00000008CDS36427303642876-
GWHAAZE00000008CDS36407263640879-
GWHAAZE00000008CDS36397223639829-
GWHAAZE00000008CDS36390403639192-
GWHAAZE00000008CDS36377573637852-
GWHAAZE00000008CDS36373653637417-
GWHAAZE00000008CDS36350753635206-
GWHAAZE00000008CDS36342943634345-
GWHAAZE00000008CDS36340663634185-
GWHAAZE00000008CDS36335213633655-
GWHAAZE00000008CDS36325563632684-
GWHAAZE00000008CDS36323123632389-
GWHAAZE00000008CDS36305783630718-
GWHAAZE00000008CDS36303883630482-
GWHAAZE00000008CDS36257773625982-
GWHAAZE00000008CDS36220313622815-
GWHAAZE00000008CDS36197683619848-
GWHAAZE00000008CDS36194343619511-
GWHAAZE00000008CDS36181383618362-
GWHAAZE00000008CDS36175583617689-
GWHAAZE00000008CDS36172453617421-
GWHAAZE00000008CDS36160873616272-
GWHAAZE00000008CDS36152763615655-
GWHAAZE00000008CDS36137853613899-
Transcript Sequence

Network for GWHGAAZE026381

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10433.10MMS1_N1347061.70E-32
PF03178.16CPSF_A106113923.20E-87
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14401CPSF1, CFT1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.458
SRR3591706second leaf3.797
SRR3591707mature leaf3.245
SRR3591708Shoot apex14.180
SRR3591709Stem4.955
SRR3591710White floral bud7.353
SRR3591711White flower12.168
SRR3591712Green floral bud7.359
SRR3591713Yellow flower7.159
SRP173429 SRR8316895Juvenile bud stage 9.270
SRR8316896Juvenile bud stage 10.398
SRR8316897Juvenile bud stage 6.777
SRR8316894Third green stage 4.466
SRR8316900Third green stage 10.014
SRR8316901Third green stage 8.471
SRR8316898Complete white stage 1.449
SRR8316899Complete white stage 7.333
SRR8316903Complete white stage 3.507
SRR8316902Silver flowering stage2.221
SRR8316904Silver flowering stage3.668
SRR8316905Silver flowering stage1.573
SRR8316906Gold flowering stage 5.008
SRR8316907Gold flowering stage 4.709
SRR8316908Gold flowering stage 8.382
SRP132670SRR6706286Control9.040
SRR6706287Light intensity 50%10.252
SRR6706288Light intensity 20%11.215
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.728
CNS0095593Slightly white alabastrum(diploid) 24.620
CNS0095594Slightly white alabastrum(diploid) 34.012
CNS0095595Whole white alabastrum(diploid) 23.751
CNS0095596Whole white alabastrum(diploid) 33.705
CNS0095597Whole white alabastrum(diploid) 43.267
CNS0095598Silvery flower (diploied) 15.997
CNS0095599Silvery flower (diploied) 27.682
CNS0095600Silvery flower (diploied) 38.397
CNS0095601Golden flower (diploid) 15.094
CNS0095602Golden flower (diploid) 28.527
CNS0095603Golden flower (diploid) 38.024
CNS0095604Slightly white alabastrum(tetraploid) 14.625
CNS0095605Slightly white alabastrum(tetraploid) 24.359
CNS0095606Slightly white alabastrum(tetraploid) 311.568
CNS0095607Whole white alabastrum(tetraploid) 12.060
CNS0095608Whole white alabastrum(tetraploid) 21.239
CNS0095609Whole white alabastrum(tetraploid) 37.012
CNS0095610Silvery flower (tetraploid) 17.575
CNS0095611Silvery flower (tetraploid) 28.355
CNS0095612Silvery flower (tetraploid) 37.575
CNS0095613Golden flower (tetraploid) 12.743
CNS0095614Golden flower (tetraploid) 25.839
CNS0095615Golden flower (tetraploid) 34.934
CRA001975CRR073297Stem 113.288
CRR073298Stem 210.885
CRR073299Stem 38.679
CRR073300Leaf 110.963
CRR073301Leaf 28.997
CRR073302Leaf 35.602
CRR073303Juvenile bud 17.125
CRR073304Juvenile bud 24.378
CRR073305Juvenile bud 37.746
CRR073306Third green 11.293
CRR073307Third green 20.799
CRR073308Third green 31.683
CRR073309Second white 12.586
CRR073310Second white 22.730
CRR073311Second white 32.692
CRR073312Silver flowering 11.751
CRR073313Silver flowering 21.733
CRR073314Silver flowering 31.936
CRR073315Gold flowering 13.094
CRR073316Gold flowering 27.830
CRR073317Gold flowering 33.693
CRR073318Tawny withering 15.024
CRR073319Tawny withering 25.104
CRR073320Tawny withering 35.085