Detail information of GWHGAAZE026392


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009797340.17.12916E-48PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SFC7|FB135_ARATH3E-13F-box protein At3g07870
trEMBLtr|A0A059B7U6|A0A059B7U6_EUCGR3E-35Uncharacterized protein {ECO:0000313|EMBL:KCW62104.1}
TAIR10AT3G07870.10.000000002F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene38294613830813-
GWHAAZE00000008mRNA38294613830813-
GWHAAZE00000008exon38294613830813-
GWHAAZE00000008CDS38294613830813-
Transcript Sequence

Network for GWHGAAZE026392

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box38744.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.180
SRR3591706second leaf8.854
SRR3591707mature leaf9.226
SRR3591708Shoot apex16.547
SRR3591709Stem17.042
SRR3591710White floral bud13.281
SRR3591711White flower15.028
SRR3591712Green floral bud15.559
SRR3591713Yellow flower11.737
SRP173429 SRR8316895Juvenile bud stage 7.554
SRR8316896Juvenile bud stage 9.830
SRR8316897Juvenile bud stage 6.103
SRR8316894Third green stage 4.318
SRR8316900Third green stage 10.180
SRR8316901Third green stage 9.639
SRR8316898Complete white stage 5.536
SRR8316899Complete white stage 15.676
SRR8316903Complete white stage 8.216
SRR8316902Silver flowering stage4.211
SRR8316904Silver flowering stage7.186
SRR8316905Silver flowering stage2.968
SRR8316906Gold flowering stage 11.094
SRR8316907Gold flowering stage 9.765
SRR8316908Gold flowering stage 6.483
SRP132670SRR6706286Control10.238
SRR6706287Light intensity 50%9.954
SRR6706288Light intensity 20%10.738
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.464
CNS0095593Slightly white alabastrum(diploid) 210.413
CNS0095594Slightly white alabastrum(diploid) 39.844
CNS0095595Whole white alabastrum(diploid) 28.176
CNS0095596Whole white alabastrum(diploid) 37.920
CNS0095597Whole white alabastrum(diploid) 410.130
CNS0095598Silvery flower (diploied) 111.166
CNS0095599Silvery flower (diploied) 212.500
CNS0095600Silvery flower (diploied) 312.006
CNS0095601Golden flower (diploid) 111.676
CNS0095602Golden flower (diploid) 212.359
CNS0095603Golden flower (diploid) 313.263
CNS0095604Slightly white alabastrum(tetraploid) 112.616
CNS0095605Slightly white alabastrum(tetraploid) 211.235
CNS0095606Slightly white alabastrum(tetraploid) 315.996
CNS0095607Whole white alabastrum(tetraploid) 19.052
CNS0095608Whole white alabastrum(tetraploid) 28.761
CNS0095609Whole white alabastrum(tetraploid) 310.491
CNS0095610Silvery flower (tetraploid) 110.181
CNS0095611Silvery flower (tetraploid) 210.388
CNS0095612Silvery flower (tetraploid) 310.788
CNS0095613Golden flower (tetraploid) 16.981
CNS0095614Golden flower (tetraploid) 29.307
CNS0095615Golden flower (tetraploid) 39.983
CRA001975CRR073297Stem 111.511
CRR073298Stem 210.668
CRR073299Stem 311.371
CRR073300Leaf 110.959
CRR073301Leaf 210.116
CRR073302Leaf 38.577
CRR073303Juvenile bud 18.926
CRR073304Juvenile bud 26.849
CRR073305Juvenile bud 310.763
CRR073306Third green 18.588
CRR073307Third green 25.099
CRR073308Third green 36.594
CRR073309Second white 19.516
CRR073310Second white 29.793
CRR073311Second white 310.892
CRR073312Silver flowering 17.795
CRR073313Silver flowering 26.806
CRR073314Silver flowering 37.363
CRR073315Gold flowering 17.213
CRR073316Gold flowering 27.452
CRR073317Gold flowering 36.300
CRR073318Tawny withering 111.886
CRR073319Tawny withering 211.755
CRR073320Tawny withering 312.842