Gene detail

Detail information of GWHGAAZE026394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038447.1	0	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
COG	YP_004775215.1	3E-30	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8RY65\|NIK2_ARATH	4E-76	Protein NSP-INTERACTING KINASE 2 (Precursor)
trEMBL	tr\|A0A061G0M4\|A0A061G0M4_THECC	0	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY22948.1}
TAIR10	AT5G51560.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3851432	3855765	-
GWHAAZE00000008	mRNA	3851432	3855765	-
GWHAAZE00000008	exon	3855429	3855765	-
GWHAAZE00000008	exon	3854318	3854578	-
GWHAAZE00000008	exon	3853114	3853977	-
GWHAAZE00000008	exon	3851432	3851913	-
GWHAAZE00000008	CDS	3855429	3855765	-
GWHAAZE00000008	CDS	3854318	3854578	-
GWHAAZE00000008	CDS	3853114	3853977	-
GWHAAZE00000008	CDS	3851432	3851913	-

Transcript Sequence
>GWHTAAZE026428 ATGGATATGAAGGCCAGGCTTGACCCAGACAACAAGATTCTCACTTCATGGACCTTTTGGGGCAACCCTTGTGATGGTTCGTTTGAGGGGGTTGCTTGCAATGGTAAGGGCCAAGTGGCTAATATATCTTTGCAGGGGAAAGGTCTCTCCGGGAAGATATCTCCGGCAGTTGGTGGGTTAAAGAACTTGACTGGCCTGTACTTGCATTACAACTCTTTGCATGGAGAGATTCCGGCAGGGATTTCGAACTTGACTCAGCTGAGTGATCTGTATCTGAATGTGAATAATCTATCTGGGTATATACCTCCTGGACTTGGAAACTTGACTAGTCTACAAGTTTTGCAGCTTTGTTATAACCAATTCACTGGAAGTATTCCCACACAATTAGGGTCTCTGAAGAAGCTTGGTGTTCTTGCTTTGCAATCTAATCACCTAACTGGTGCAATCCCCGCTAGCTTGGGGGACTTGAGATTGTTAATGAGGTTAGACTTAAGTTTCAATAGTCTTTTTGGCTCTATTCCCTCAACACTAGCTGATGCTCCTCGGCTTGAAGTTCTAGATATCCGAAACAATACTCTTTCTGGCAACGTACCTCCTGCTTTGAAGGAATTAGTTGGAGGTTTCCAGTATGAAAACAACCCAGGATTATGTGGAGTTGGGTTTTCAGCTTTGGGAGCTTGTAATATTTCAGATCAAATGAATCCAATTCAACCAGAACCTTTTGGAGGGGACACATCAAAAGCTCTCCCAGAGACAGCCGATTTAAAGTTGAACTGTAGCGAAACCCATTGCTCAAACTCGTCTAAATCCCCACATGCTTTACTTATCGGATCAATCGTGGTCTCTTTTTCATTATCAGCTATAGGAATTACAACATTTTTGCAGTACCGTCGTAGAAAAATGGATCTCAAGAGTGCATTTGACATATCCGATAGTTGTATTAGCACTGACCAGGCCAAGGAGGTTTTCCGAAAGAAAGGCTCTCCTCTTATAAGCCTCGAGTACCCTAGAGGGTGGGACCCATTGGCTGAGGGTCGGCGAATTGGAGGGGTCTCTCAAGAGATTTTGAAGAGCTTTAGGTTCAATTTAGAAGAGGTACAATCTGCAACCCAATATTTTTCAGAAAAAAAATTGTTGGGTAAGAGCAAATTTTCGGCCATCTATAAAGGGATTCTAAGAGATGGATCACTTGTTGCTATCAGGAGCATCACAAAAACAAGTTGTAAGTCAGAGGAATCTGAATTCTTGAAGGGACTGAACATTTTGACCACACTGAGGCATGAAAATTTAGTGAGGTTGAGAGGATTTTGCTGTTCGAAAAGTCGGGGTGAGTGGTTTCTTATATACAATTTTGTTCCGAATGGGAATTTATTGCGGTATTTGGATGTTAGAGAAGAATATGGTGATGGTCAGGTCCTTGAATGGTCTACTAGAGTTTCCATCATCACTGGCATTGCCAAAGGTATACAGTACTTACATGGCTGCAAGGTGAACAAACCTGATCTAGTTCACCAAAACATATCAGCCGGTAACGTGCTCATTGATCAACAGTTCAAACCACTACTTTCTGATTCGGGCCTGCACAAGCTTCTTACCAGCGACACTGTCTTCTCAATTCTCAAGAAAAGTGCTGCCATGGGATATCTAGCTCCCGAGTACACCAATACAGGCCGTTTCACTGAGAAAAGTGATGTTTATGCATTTGGGGTCCTTGTTCTCCAGATTCTCTCTGGGAAACGGAAGATCACAAGCTTAATTCGAGCATCTGCCGAATCGGGCAGATTCCACGAGTTTTTTGACAAAAATATCCAAGGAAAATTCTCTGAACATGAAGCTGCAGAGATTGCGAAAGTTGCTTTGTTATGTACCAATGAATCTCCCGAGCAAAGGCCGTCCATGGAAGCGATTATACAAGAACTAGGTAAGGCTACTACTTGTTTATGA

Network for GWHGAAZE026394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	134	193	9.80E-07
PF07714.18	PK_Tyr_Ser-Thr	376	640	2.80E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.187
	SRR3591706	second leaf	3.507
	SRR3591707	mature leaf	1.508
	SRR3591708	Shoot apex	7.290
	SRR3591709	Stem	0.492
	SRR3591710	White floral bud	0.461
	SRR3591711	White flower	0.612
	SRR3591712	Green floral bud	0.477
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	0.143
	SRR8316896	Juvenile bud stage	0.405
	SRR8316897	Juvenile bud stage	0.287
	SRR8316894	Third green stage	0.378
	SRR8316900	Third green stage	0.655
	SRR8316901	Third green stage	0.399
	SRR8316898	Complete white stage	0.287
	SRR8316899	Complete white stage	0.704
	SRR8316903	Complete white stage	0.946
	SRR8316902	Silver flowering stage	0.498
	SRR8316904	Silver flowering stage	0.301
	SRR8316905	Silver flowering stage	0.141
	SRR8316906	Gold flowering stage	1.077
	SRR8316907	Gold flowering stage	0.349
	SRR8316908	Gold flowering stage	0.464
SRP132670	SRR6706286	Control	0.578
	SRR6706287	Light intensity 50%	0.518
	SRR6706288	Light intensity 20%	0.543
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.348
	CNS0095593	Slightly white alabastrum(diploid) 2	0.432
	CNS0095594	Slightly white alabastrum(diploid) 3	0.292
	CNS0095595	Whole white alabastrum(diploid) 2	0.152
	CNS0095596	Whole white alabastrum(diploid) 3	0.164
	CNS0095597	Whole white alabastrum(diploid) 4	0.254
	CNS0095598	Silvery flower (diploied) 1	0.904
	CNS0095599	Silvery flower (diploied) 2	0.770
	CNS0095600	Silvery flower (diploied) 3	0.770
	CNS0095601	Golden flower (diploid) 1	0.683
	CNS0095602	Golden flower (diploid) 2	0.589
	CNS0095603	Golden flower (diploid) 3	0.805
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.619
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.165
	CNS0095610	Silvery flower (tetraploid) 1	0.301
	CNS0095611	Silvery flower (tetraploid) 2	0.626
	CNS0095612	Silvery flower (tetraploid) 3	0.280
	CNS0095613	Golden flower (tetraploid) 1	0.201
	CNS0095614	Golden flower (tetraploid) 2	0.635
	CNS0095615	Golden flower (tetraploid) 3	0.465
CRA001975	CRR073297	Stem 1	0.447
	CRR073298	Stem 2	0.639
	CRR073299	Stem 3	0.242
	CRR073300	Leaf 1	0.952
	CRR073301	Leaf 2	0.435
	CRR073302	Leaf 3	0.472
	CRR073303	Juvenile bud 1	0.358
	CRR073304	Juvenile bud 2	0.586
	CRR073305	Juvenile bud 3	0.936
	CRR073306	Third green 1	0.362
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.267
	CRR073309	Second white 1	0.114
	CRR073310	Second white 2	0.067
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.453
	CRR073313	Silver flowering 2	0.144
	CRR073314	Silver flowering 3	0.130
	CRR073315	Gold flowering 1	0.506
	CRR073316	Gold flowering 2	1.167
	CRR073317	Gold flowering 3	0.393
	CRR073318	Tawny withering 1	0.652
	CRR073319	Tawny withering 2	0.549
	CRR073320	Tawny withering 3	0.356