Gene detail

Detail information of GWHGAAZE026407

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264986.2	0	PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	1E-130	NAC domain-containing protein 7
trEMBL	tr\|F6HAP1\|F6HAP1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49324.1}
TAIR10	AT1G12260.1	1E-98	NAC 007

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4130909	4133730	+
GWHAAZE00000008	mRNA	4130909	4133730	+
GWHAAZE00000008	exon	4130909	4131071	+
GWHAAZE00000008	exon	4131456	4131739	+
GWHAAZE00000008	exon	4133137	4133730	+
GWHAAZE00000008	CDS	4130909	4131071	+
GWHAAZE00000008	CDS	4131456	4131739	+
GWHAAZE00000008	CDS	4133137	4133730	+

Transcript Sequence
>GWHTAAZE026441 ATGAATACTACCTTTTCACATGTTCCTCCAGGTTTTCGGTTCCACCCTACAGATGAAGAACTTGTGGATTATTATCTGAGGAAGAAGATCAATGGTACAAGGATTGATTTAGATGTCATCAGAGATGTTGATCTTTACAAAATTGAACCGTGGGACCTTCAAGAGCTATGCAGTCTAGGAACAGATGATCAAAACGAGTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCGACCGGAACTAGGACAAATAGGGCAACAACAGCCGGTTTCTGGAAGGCAACAGGCAGAGACAAGGCTATTTACTCTAAGCATGACCTTATTGGCATGAGAAAGACCTTGGTTTTTTACAAAGGCCGCGCTCCCAACGGGCAGAAATCCGATTGGATTATGCATGAGTATCGACTCGAAACTGACGAAAATGCAGCTACACAGGCAAGTGCACTCGAAGAAGGTTGGGTTGTTTGCCGAGTTTTCAAGAAGAGAATAGCAACCATTAATAGGAGAATGAGCGAGCATGAATCCCCTCTTTGGTACGACGACGGAGTATCATTCATGACAGACATGGATTCCCCAAAGCAAAACCCTAACCCCAATATGACCTACCACTACTCTTACTCTTGCAAGAAAGAGCTAGATTTGCAATATCAAATCCCCCAAGAGCACTTTCACCAACTCCCTCTTCTAGAGAGCCCAAAAATACTACAACAAACCAATTCTTTGCCATTATATGGTTTTGACATAAACCATGGAACCTCTTTGCAAGAACATGTTATTCATGAAAATCACGGCCAAAATTTGGAGCCAATTTATGTTCCAAATAATACTAATGAGCAAGAACCAGATCAAGTGACCGATTGGCGAGTACTCCACAAGTTTGTCGCATCACAACTTAGCCACGAAGATCTCTCTAAGGAAAATGACTACTCAACATCAGCCAGTCACTCGAATATAGTTGACGCGCACTTGAACAAGCAAGAAAGCATGATGGAAAATGCCTCCACGTCAACCTCTAGTTGTCAAATTGATCTATGGAAGTGA

Network for GWHGAAZE026407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	9	136	2.50E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.413
	SRR3591706	second leaf	2.577
	SRR3591707	mature leaf	0.618
	SRR3591708	Shoot apex	0.770
	SRR3591709	Stem	2.557
	SRR3591710	White floral bud	0.342
	SRR3591711	White flower	0.106
	SRR3591712	Green floral bud	0.830
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.233
	SRR8316896	Juvenile bud stage	0.386
	SRR8316897	Juvenile bud stage	0.461
	SRR8316894	Third green stage	0.245
	SRR8316900	Third green stage	0.620
	SRR8316901	Third green stage	0.783
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.089
	SRR8316903	Complete white stage	0.152
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.048
	SRR6706287	Light intensity 50%	0.088
	SRR6706288	Light intensity 20%	0.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.396
	CNS0095593	Slightly white alabastrum(diploid) 2	0.938
	CNS0095594	Slightly white alabastrum(diploid) 3	0.250
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.327
	CNS0095597	Whole white alabastrum(diploid) 4	0.147
	CNS0095598	Silvery flower (diploied) 1	0.012
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.063
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.415
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.063
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.488
	CRR073298	Stem 2	0.806
	CRR073299	Stem 3	1.791
	CRR073300	Leaf 1	1.085
	CRR073301	Leaf 2	0.367
	CRR073302	Leaf 3	0.387
	CRR073303	Juvenile bud 1	0.444
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.308
	CRR073306	Third green 1	0.022
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.204
	CRR073316	Gold flowering 2	0.072
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.200
	CRR073319	Tawny withering 2	2.695
	CRR073320	Tawny withering 3	4.595