Detail information of GWHGAAZE026412


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05329.10unnamed protein product [Coffea canephora]
Swissprottr|Q8VYC8|RIN2_ARATH0E3 ubiquitin protein ligase RIN2
trEMBLtr|A0A068UAV9|A0A068UAV9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313|EMBL:CDP05329.1}
TAIR10AT4G25230.20RPM1 interacting protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene42192234232838-
GWHAAZE00000008mRNA42192234232838-
GWHAAZE00000008exon42325994232838-
GWHAAZE00000008exon42299474230024-
GWHAAZE00000008exon42267354226821-
GWHAAZE00000008exon42264144226535-
GWHAAZE00000008exon42256404225736-
GWHAAZE00000008exon42254394225544-
GWHAAZE00000008exon42253204225349-
GWHAAZE00000008exon42240764224233-
GWHAAZE00000008exon42238234223960-
GWHAAZE00000008exon42226934222760-
GWHAAZE00000008exon42223824222612-
GWHAAZE00000008exon42210174221407-
GWHAAZE00000008exon42192234219279-
GWHAAZE00000008CDS42325994232838-
GWHAAZE00000008CDS42299474230024-
GWHAAZE00000008CDS42267354226821-
GWHAAZE00000008CDS42264144226535-
GWHAAZE00000008CDS42256404225736-
GWHAAZE00000008CDS42254394225544-
GWHAAZE00000008CDS42253204225349-
GWHAAZE00000008CDS42240764224233-
GWHAAZE00000008CDS42238234223960-
GWHAAZE00000008CDS42226934222760-
GWHAAZE00000008CDS42223824222612-
GWHAAZE00000008CDS42210174221407-
GWHAAZE00000008CDS42192234219279-
Transcript Sequence

Network for GWHGAAZE026412

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23463902.50E-08
PF02845.17CUE5646006.10E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10636AMFR, GP78 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.050
SRR3591706second leaf28.472
SRR3591707mature leaf42.841
SRR3591708Shoot apex24.621
SRR3591709Stem69.282
SRR3591710White floral bud88.151
SRR3591711White flower81.541
SRR3591712Green floral bud54.989
SRR3591713Yellow flower61.701
SRP173429 SRR8316895Juvenile bud stage 25.106
SRR8316896Juvenile bud stage 33.506
SRR8316897Juvenile bud stage 12.002
SRR8316894Third green stage 13.095
SRR8316900Third green stage 44.608
SRR8316901Third green stage 43.208
SRR8316898Complete white stage 34.568
SRR8316899Complete white stage 65.987
SRR8316903Complete white stage 53.649
SRR8316902Silver flowering stage48.414
SRR8316904Silver flowering stage67.693
SRR8316905Silver flowering stage27.731
SRR8316906Gold flowering stage 87.284
SRR8316907Gold flowering stage 90.272
SRR8316908Gold flowering stage 94.934
SRP132670SRR6706286Control35.437
SRR6706287Light intensity 50%37.795
SRR6706288Light intensity 20%39.546
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.926
CNS0095593Slightly white alabastrum(diploid) 226.856
CNS0095594Slightly white alabastrum(diploid) 325.380
CNS0095595Whole white alabastrum(diploid) 232.060
CNS0095596Whole white alabastrum(diploid) 332.958
CNS0095597Whole white alabastrum(diploid) 433.905
CNS0095598Silvery flower (diploied) 129.156
CNS0095599Silvery flower (diploied) 226.517
CNS0095600Silvery flower (diploied) 379.639
CNS0095601Golden flower (diploid) 126.117
CNS0095602Golden flower (diploid) 263.643
CNS0095603Golden flower (diploid) 356.690
CNS0095604Slightly white alabastrum(tetraploid) 132.667
CNS0095605Slightly white alabastrum(tetraploid) 228.169
CNS0095606Slightly white alabastrum(tetraploid) 336.300
CNS0095607Whole white alabastrum(tetraploid) 136.035
CNS0095608Whole white alabastrum(tetraploid) 238.980
CNS0095609Whole white alabastrum(tetraploid) 337.950
CNS0095610Silvery flower (tetraploid) 170.886
CNS0095611Silvery flower (tetraploid) 266.645
CNS0095612Silvery flower (tetraploid) 378.180
CNS0095613Golden flower (tetraploid) 131.943
CNS0095614Golden flower (tetraploid) 253.557
CNS0095615Golden flower (tetraploid) 361.616
CRA001975CRR073297Stem 147.781
CRR073298Stem 241.458
CRR073299Stem 335.735
CRR073300Leaf 154.297
CRR073301Leaf 245.196
CRR073302Leaf 340.720
CRR073303Juvenile bud 157.556
CRR073304Juvenile bud 258.132
CRR073305Juvenile bud 369.609
CRR073306Third green 182.004
CRR073307Third green 266.537
CRR073308Third green 374.910
CRR073309Second white 190.894
CRR073310Second white 277.014
CRR073311Second white 370.680
CRR073312Silver flowering 177.855
CRR073313Silver flowering 280.101
CRR073314Silver flowering 372.169
CRR073315Gold flowering 115.909
CRR073316Gold flowering 224.079
CRR073317Gold flowering 316.883
CRR073318Tawny withering 148.470
CRR073319Tawny withering 251.120
CRR073320Tawny withering 350.212