Gene detail

Detail information of GWHGAAZE026419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05348.1	0	unnamed protein product [Coffea canephora]
COG	YP_004775215.1	2E-54	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FII5\|TDR_ARATH	0	Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBL	tr\|A0A068UCI1\|A0A068UCI1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05348.1}
TAIR10	AT5G61480.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4376752	4380784	-
GWHAAZE00000008	mRNA	4376752	4380784	-
GWHAAZE00000008	exon	4376752	4377179	-
GWHAAZE00000008	exon	4378136	4380124	-
GWHAAZE00000008	exon	4380238	4380784	-
GWHAAZE00000008	CDS	4380238	4380784	-
GWHAAZE00000008	CDS	4378136	4380124	-
GWHAAZE00000008	CDS	4376752	4377179	-

Transcript Sequence
>GWHTAAZE026453 ATGAACCACCACCTTTCTATCTCTACCTTCTCTCTCCTCTTTCTCACACTGGCCCAACTCCTCTCCGCCACCACCGGCAATCTCCCTCTCCCTCTCCAACTCATCTCGCTCCTCTCTCTAAAGTCCTCCCTCAAAGACCCCCTCAACACCTTCCATGACTGGACCCCATCACCCTCCTCCACTAAAGTCTGGTGCTCATGGTCTGGCGTCAAATGTGACAATAAAACCGCCCGAATCACTGCCCTCGACCTCTCCAAACGCAACCTCTCCGGCCAAATTCCGGCCAACATCCGCCAACTATCTGACCTCACACACCTCAACATTAGTGGAAACGCATTCGAGGGACCACTACAGACCGTCATTTTCGAATTACCCAACCTCAAAATCCTTGACATTAGCCGTAACTATTTCAACTCCACTTTCCCGCTCAATGTATCCAAACTCAACCAACTCACATTCCTAGACGCTTTCAGTAACAGCTTCACCGGTCCATTACCGGACGAATTTACTCGCCTCGAATTCCTCGAGAACCTCAACCTCGGAGGAACTGAACTCGAGCATCTAGAAATCGGCTACAACGAGTTTACTGGCGGATTACCAGCGGAATTGGCGAATTTATCGAATTTGCAGTACCTTGATATCTCAACAGCTAAAATCTCCGGTGAAATTCCACCTGAATTAGGTAATTTAACGAAGCTCGATTCGTTCTTGCTGTTTAAGAACCATTTTACTGGCAAAATTCCGGCGAGTTTAGGGCAAATGGAAGCTCTAAAGTTTCTCGATGTATCTGATAACAAGTTATCTGGTACAATTCCCAGAGAATTTTCATTGATGAAGCAATTGAACATGTTGAGCTTGATGAACAACGAATTAACAGGGGAAATACCCGAAGGTATTGGCGAGTTACCGAATTTAGATACGGTTTCTCTGTGGAACAACTCTCTCACCGGATTTTTGCCCCAAAAGTTGGGGCAAAATGCAAAGTTATTCAAGCTCGATGTGTCTTCAAATTCACTTTCCGGTCCAATTCCACCAAATCTGTGCCTCGGTAACCAACTTGTGAAACTAATCCTCTTTTCAAACAAATTTGTTGGTGAGTTGCCTTCGTCTTTAGCCAATTGTACTTCATTATTGAGGTTTCGAATTCAAAACAACAATCTCAACGGTTCTATACCTTATGGATTCGGTTATTTGCCGAATTTGACGTTCATCGACATGAGCAAGAACAATTTTTCCGGTTCAATTCCAAAAGATATTGGCAATGCGGAGAAGTTACAGTACTTGAATATATCTGTGAATTCGTTTAATTCTGAGTTACCTAGTAATATTTGGAGTTCACCGAGTTTACAGATCTTCTCGGCCAGTGACAGTAAACTAACTGGAAAGATACCGGAGTTCATCGGTTGCCGGAGTTTGTATAAGATTGAATTGGATGGAAATGATTTAAGTGGAAGCATTCCATGGGACATTCATCATTGTGAGAAGCTTATTTTGTTGAATTTACAGTTTAATTCCCTTACAGGTATAATTCCATGGGAGATTTCAACTCTACCGTCAATAACTGACGTAGATTTATCTCACAATTTTCTCACCGGCACAATTCCGTCTAATTTCGAAAATTGTAGCACCTTAGAGAACTTCAATGTGTCGTTTAATCAGCTCACTGGACCAGTGCCCTCGTCGGGGTCAATTTTCTCCAGCTTTCATCCGTCGTCATTCACCGGAAACGAAGGCCTCTGCGGCGGAGTGATAAGAAAGCCGTGCCGGACAGAAGGACTCGCAGCCGGCGAGGCGGTTGTCCGGCCGCAGCCGAAGAAAACCGCCGGAGCTATAGTGTGGATCACGGCAGCTGCATTCGGAATCGGCCTTTTCATCCTCATCGCCGGCAGCCGGTGCTTCCACGCAAAATACACGCGCCGCCGGTTTGCTGCCGGAGACCGAGAGATCGGGCCGTGGAAACTAACCGCCTTTCAGAGATTGAATTTCGCGGCGGATGATGTACTTGAGTGCTTATCAACGACAGATAAGATCATAGGGATGGGGTCCACTGGGACCGTTTACAAAGCTGAGATGCCAGGTGGCGAGATCATAGCGGTGAAGAAGTTATGGGGGAATCATAAAGACACGATCCGACGGCGGAGAGGGGTGCTTGCTGAGGTGGAGGTGTTGGGGAACGTGAGACATAGAAATATAGTGAGATTGTTGGGGTGCTGCAGCAACAGCGAGTGCACAATGCTGCTCTATGAATACATGCCTAATGGAAGCTTGGATGATTTGTTACATGGGAAAAACAAGGGTGATAATTTGGTGGCGGACTGGCTCACCCGGTACAAGATAGCATTAGGCGTGGCCCAGGGGATTTGCTATCTTCATCATGACTGTGATCCGGTGATTGTTCACCGTGATCTTAAACCTAGTAATATTCTTTTGGACGGTGAGATGGAGGCTCGGGTGGCGGATTTTGGGGTGGCGAAACTGATCGAGTGCGACGAATCAATGTCGGTGATCGCGGGATCATATGGTTACATTGCGCCTGAATATGCTTACACTCTACAAGTTGATGAGAAGAGTGACATATATAGCTTTGGAGTGGTGTTATTAGAGATACTAAGTGGAAAAAGATCGGTGACTGCAGAATTCGGAGATGGAAATAGTATTGTGGATTGGGTAAGGTCTAAAATCAGGACAAAAGACGGGATTAAAGACGTGCTCGATGAAAATGCTGGTGCTTCATGCGCCTCAGTGAGAGATGAAATGATGTTGTTGCTAAAGGTTGCATTGCTTTGCACAAGTAAGAATCCAGCTGATCGACCGTCCATGAGGGATGTAGTTTCAATGTTGCAAGAAGCCAAGCCCAAGAGAAAATCTCCCAAAGATGGTGGTGTCGGCAACGTGGTTGTTAAGAGTGGTGTGAATCATCATTTGGATAAGGAGTCCGCAAATGTAGAATGTTCATATGATTGA

Network for GWHGAAZE026419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	33	73	9.70E-07
PF00069.26	Pkinase	674	945	7.90E-47

Protein Sequence

>GWHPAAZE026437
MNHHLSISTFSLLFLTLAQLLSATTGNLPLPLQLISLLSLKSSLKDPLNTFHDWTPSPSSTKVWCSWSGVKCDNKTARITALDLSKRNLSGQIPANIRQLSDLTHLNISGNAFEGPLQTVIFELPNLKILDISRNYFNSTFPLNVSKLNQLTFLDAFSNSFTGPLPDEFTRLEFLENLNLGGTELEHLEIGYNEFTGGLPAELANLSNLQYLDISTAKISGEIPPELGNLTKLDSFLLFKNHFTGKIPASLGQMEALKFLDVSDNKLSGTIPREFSLMKQLNMLSLMNNELTGEIPEGIGELPNLDTVSLWNNSLTGFLPQKLGQNAKLFKLDVSSNSLSGPIPPNLCLGNQLVKLILFSNKFVGELPSSLANCTSLLRFRIQNNNLNGSIPYGFGYLPNLTFIDMSKNNFSGSIPKDIGNAEKLQYLNISVNSFNSELPSNIWSSPSLQIFSASDSKLTGKIPEFIGCRSLYKIELDGNDLSGSIPWDIHHCEKLILLNLQFNSLTGIIPWEISTLPSITDVDLSHNFLTGTIPSNFENCSTLENFNVSFNQLTGPVPSSGSIFSSFHPSSFTGNEGLCGGVIRKPCRTEGLAAGEAVVRPQPKKTAGAIVWITAAAFGIGLFILIAGSRCFHAKYTRRRFAAGDREIGPWKLTAFQRLNFAADDVLECLSTTDKIIGMGSTGTVYKAEMPGGEIIAVKKLWGNHKDTIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNSECTMLLYEYMPNGSLDDLLHGKNKGDNLVADWLTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIECDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSFGVVLLEILSGKRSVTAEFGDGNSIVDWVRSKIRTKDGIKDVLDENAGASCASVRDEMMLLLKVALLCTSKNPADRPSMRDVVSMLQEAKPKRKSPKDGGVGNVVVKSGVNHHLDKESANVECSYD

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.183
	SRR3591706	second leaf	11.059
	SRR3591707	mature leaf	3.098
	SRR3591708	Shoot apex	23.944
	SRR3591709	Stem	41.669
	SRR3591710	White floral bud	3.047
	SRR3591711	White flower	3.141
	SRR3591712	Green floral bud	3.449
	SRR3591713	Yellow flower	0.313
SRP173429	SRR8316895	Juvenile bud stage	2.721
	SRR8316896	Juvenile bud stage	2.828
	SRR8316897	Juvenile bud stage	1.124
	SRR8316894	Third green stage	1.029
	SRR8316900	Third green stage	0.606
	SRR8316901	Third green stage	0.829
	SRR8316898	Complete white stage	0.125
	SRR8316899	Complete white stage	1.833
	SRR8316903	Complete white stage	0.638
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.087
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.025
	SRR8316908	Gold flowering stage	0.061
SRP132670	SRR6706286	Control	1.327
	SRR6706287	Light intensity 50%	1.535
	SRR6706288	Light intensity 20%	1.437
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.481
	CNS0095593	Slightly white alabastrum(diploid) 2	2.078
	CNS0095594	Slightly white alabastrum(diploid) 3	1.462
	CNS0095595	Whole white alabastrum(diploid) 2	1.322
	CNS0095596	Whole white alabastrum(diploid) 3	0.788
	CNS0095597	Whole white alabastrum(diploid) 4	0.369
	CNS0095598	Silvery flower (diploied) 1	3.253
	CNS0095599	Silvery flower (diploied) 2	1.783
	CNS0095600	Silvery flower (diploied) 3	1.160
	CNS0095601	Golden flower (diploid) 1	2.882
	CNS0095602	Golden flower (diploid) 2	2.582
	CNS0095603	Golden flower (diploid) 3	2.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.619
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.820
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.195
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.841
	CNS0095610	Silvery flower (tetraploid) 1	0.300
	CNS0095611	Silvery flower (tetraploid) 2	1.603
	CNS0095612	Silvery flower (tetraploid) 3	0.923
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.134
CRA001975	CRR073297	Stem 1	7.172
	CRR073298	Stem 2	7.785
	CRR073299	Stem 3	17.523
	CRR073300	Leaf 1	1.456
	CRR073301	Leaf 2	1.802
	CRR073302	Leaf 3	1.785
	CRR073303	Juvenile bud 1	0.748
	CRR073304	Juvenile bud 2	0.476
	CRR073305	Juvenile bud 3	1.718
	CRR073306	Third green 1	0.186
	CRR073307	Third green 2	0.220
	CRR073308	Third green 3	0.540
	CRR073309	Second white 1	0.013
	CRR073310	Second white 2	0.110
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	1.926
	CRR073316	Gold flowering 2	3.466
	CRR073317	Gold flowering 3	3.379
	CRR073318	Tawny withering 1	76.729
	CRR073319	Tawny withering 2	26.033
	CRR073320	Tawny withering 3	79.812