Detail information of GWHGAAZE026447


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281150.11.0483E-133PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera]
COGYP_008431664.15E-24hypothetical protein N186_01315
Swissprottr|P28188|RAD2A_ARATH2E-128Ras-related protein RABD2a
trEMBLtr|D7U755|D7U755_VITVI4E-134Putative uncharacterized protein {ECO:0000313|EMBL:CBI38569.3}
TAIR10AT1G02130.12E-101RAS 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene48313214834867-
GWHAAZE00000008mRNA48313214834867-
GWHAAZE00000008exon48313214831417-
GWHAAZE00000008exon48320344832137-
GWHAAZE00000008exon48322364832391-
GWHAAZE00000008exon48325264832597-
GWHAAZE00000008exon48328154832862-
GWHAAZE00000008exon48329434833032-
GWHAAZE00000008exon48345974834669-
GWHAAZE00000008exon48348424834867-
GWHAAZE00000008CDS48348424834867-
GWHAAZE00000008CDS48345974834669-
GWHAAZE00000008CDS48329434833032-
GWHAAZE00000008CDS48328154832862-
GWHAAZE00000008CDS48325264832597-
GWHAAZE00000008CDS48322364832391-
GWHAAZE00000008CDS48320344832137-
GWHAAZE00000008CDS48313214831417-
Transcript Sequence

Network for GWHGAAZE026447

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras141872.20E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf137.634
SRR3591706second leaf79.375
SRR3591707mature leaf89.139
SRR3591708Shoot apex109.917
SRR3591709Stem173.059
SRR3591710White floral bud128.514
SRR3591711White flower154.777
SRR3591712Green floral bud87.697
SRR3591713Yellow flower183.249
SRP173429 SRR8316895Juvenile bud stage 58.568
SRR8316896Juvenile bud stage 84.566
SRR8316897Juvenile bud stage 43.334
SRR8316894Third green stage 41.182
SRR8316900Third green stage 114.996
SRR8316901Third green stage 108.620
SRR8316898Complete white stage 78.424
SRR8316899Complete white stage 190.678
SRR8316903Complete white stage 97.774
SRR8316902Silver flowering stage71.905
SRR8316904Silver flowering stage103.738
SRR8316905Silver flowering stage49.036
SRR8316906Gold flowering stage 198.232
SRR8316907Gold flowering stage 173.464
SRR8316908Gold flowering stage 178.997
SRP132670SRR6706286Control169.592
SRR6706287Light intensity 50%162.849
SRR6706288Light intensity 20%166.540
CNP0000432CNS0095592Slightly white alabastrum(diploid) 185.105
CNS0095593Slightly white alabastrum(diploid) 286.041
CNS0095594Slightly white alabastrum(diploid) 380.354
CNS0095595Whole white alabastrum(diploid) 278.140
CNS0095596Whole white alabastrum(diploid) 371.663
CNS0095597Whole white alabastrum(diploid) 482.780
CNS0095598Silvery flower (diploied) 1124.520
CNS0095599Silvery flower (diploied) 2109.984
CNS0095600Silvery flower (diploied) 3180.497
CNS0095601Golden flower (diploid) 1135.082
CNS0095602Golden flower (diploid) 2185.286
CNS0095603Golden flower (diploid) 3177.851
CNS0095604Slightly white alabastrum(tetraploid) 1101.674
CNS0095605Slightly white alabastrum(tetraploid) 277.114
CNS0095606Slightly white alabastrum(tetraploid) 3136.966
CNS0095607Whole white alabastrum(tetraploid) 165.708
CNS0095608Whole white alabastrum(tetraploid) 259.382
CNS0095609Whole white alabastrum(tetraploid) 398.656
CNS0095610Silvery flower (tetraploid) 1202.759
CNS0095611Silvery flower (tetraploid) 2217.225
CNS0095612Silvery flower (tetraploid) 3175.170
CNS0095613Golden flower (tetraploid) 1186.889
CNS0095614Golden flower (tetraploid) 2205.979
CNS0095615Golden flower (tetraploid) 3229.469
CRA001975CRR073297Stem 167.155
CRR073298Stem 262.302
CRR073299Stem 370.073
CRR073300Leaf 181.483
CRR073301Leaf 280.394
CRR073302Leaf 381.134
CRR073303Juvenile bud 179.338
CRR073304Juvenile bud 283.146
CRR073305Juvenile bud 369.594
CRR073306Third green 160.957
CRR073307Third green 261.446
CRR073308Third green 350.901
CRR073309Second white 180.095
CRR073310Second white 293.714
CRR073311Second white 363.037
CRR073312Silver flowering 147.368
CRR073313Silver flowering 234.347
CRR073314Silver flowering 335.336
CRR073315Gold flowering 147.438
CRR073316Gold flowering 258.227
CRR073317Gold flowering 340.500
CRR073318Tawny withering 181.073
CRR073319Tawny withering 275.707
CRR073320Tawny withering 374.049