Detail information of GWHGAAZE026460


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009789874.11.7759E-173PREDICTED: pectinesterase 1-like [Nicotiana sylvestris]
COGYP_006407803.17E-55pectin methylesterase
Swissprottr|B2VPR8|AL11B_OLEEU7E-161Pectinesterase 2 (Precursor)
trEMBLtr|A0A068UZ94|A0A068UZ94_COFCA4E-172Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT1G69940.16E-120Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene49946954999733-
GWHAAZE00000008mRNA49946954999733-
GWHAAZE00000008exon49992394999733-
GWHAAZE00000008exon49989274999133-
GWHAAZE00000008exon49985564998797-
GWHAAZE00000008exon49982464998399-
GWHAAZE00000008exon49962044996346-
GWHAAZE00000008exon49960154996110-
GWHAAZE00000008exon49957184995804-
GWHAAZE00000008exon49946954994890-
GWHAAZE00000008CDS49992394999733-
GWHAAZE00000008CDS49989274999133-
GWHAAZE00000008CDS49985564998797-
GWHAAZE00000008CDS49982464998399-
GWHAAZE00000008CDS49962044996346-
GWHAAZE00000008CDS49960154996110-
GWHAAZE00000008CDS49957184995804-
GWHAAZE00000008CDS49946954994890-
Transcript Sequence

Network for GWHGAAZE026460

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01095.20Pectinesterase723572.20E-63
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.885
SRR3591706second leaf1.842
SRR3591707mature leaf1.222
SRR3591708Shoot apex0.486
SRR3591709Stem2.442
SRR3591710White floral bud228.081
SRR3591711White flower6.346
SRR3591712Green floral bud365.367
SRR3591713Yellow flower1.210
SRP173429 SRR8316895Juvenile bud stage 1.225
SRR8316896Juvenile bud stage 1.091
SRR8316897Juvenile bud stage 1.106
SRR8316894Third green stage 7.026
SRR8316900Third green stage 191.679
SRR8316901Third green stage 168.834
SRR8316898Complete white stage 0.287
SRR8316899Complete white stage 2.275
SRR8316903Complete white stage 0.597
SRR8316902Silver flowering stage3.392
SRR8316904Silver flowering stage7.465
SRR8316905Silver flowering stage1.633
SRR8316906Gold flowering stage 1.192
SRR8316907Gold flowering stage 0.626
SRR8316908Gold flowering stage 0.260
SRP132670SRR6706286Control164.438
SRR6706287Light intensity 50%159.358
SRR6706288Light intensity 20%143.943
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.606
CNS0095593Slightly white alabastrum(diploid) 229.055
CNS0095594Slightly white alabastrum(diploid) 313.770
CNS0095595Whole white alabastrum(diploid) 2273.089
CNS0095596Whole white alabastrum(diploid) 3354.157
CNS0095597Whole white alabastrum(diploid) 4343.606
CNS0095598Silvery flower (diploied) 18.789
CNS0095599Silvery flower (diploied) 238.512
CNS0095600Silvery flower (diploied) 311.263
CNS0095601Golden flower (diploid) 111.801
CNS0095602Golden flower (diploid) 28.874
CNS0095603Golden flower (diploid) 38.433
CNS0095604Slightly white alabastrum(tetraploid) 1151.601
CNS0095605Slightly white alabastrum(tetraploid) 2144.483
CNS0095606Slightly white alabastrum(tetraploid) 30.411
CNS0095607Whole white alabastrum(tetraploid) 1625.422
CNS0095608Whole white alabastrum(tetraploid) 2851.838
CNS0095609Whole white alabastrum(tetraploid) 3374.138
CNS0095610Silvery flower (tetraploid) 13.674
CNS0095611Silvery flower (tetraploid) 225.864
CNS0095612Silvery flower (tetraploid) 372.473
CNS0095613Golden flower (tetraploid) 15.689
CNS0095614Golden flower (tetraploid) 21.274
CNS0095615Golden flower (tetraploid) 338.523
CRA001975CRR073297Stem 18.424
CRR073298Stem 26.424
CRR073299Stem 36.697
CRR073300Leaf 1141.945
CRR073301Leaf 291.522
CRR073302Leaf 350.543
CRR073303Juvenile bud 1133.895
CRR073304Juvenile bud 2128.498
CRR073305Juvenile bud 315.788
CRR073306Third green 1107.091
CRR073307Third green 2141.988
CRR073308Third green 3102.077
CRR073309Second white 16.089
CRR073310Second white 212.796
CRR073311Second white 319.525
CRR073312Silver flowering 188.592
CRR073313Silver flowering 279.157
CRR073314Silver flowering 339.033
CRR073315Gold flowering 1101.119
CRR073316Gold flowering 219.718
CRR073317Gold flowering 351.605
CRR073318Tawny withering 179.784
CRR073319Tawny withering 275.382
CRR073320Tawny withering 377.255