Detail information of GWHGAAZE026468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004235215.10PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Solanum lycopersicum]
Swissprottr|Q9LW77|HRD1A_ARATH2E-11ERAD-associated E3 ubiquitin-protein ligase HRD1A {ECO:0000305}
trEMBLtr|K4BIW9|K4BIW9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g095450.2.1}
TAIR10AT5G01960.12E-159RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene51053185113612-
GWHAAZE00000008mRNA51053185113612-
GWHAAZE00000008exon51053185105739-
GWHAAZE00000008exon51061405106243-
GWHAAZE00000008exon51069975107074-
GWHAAZE00000008exon51082725108436-
GWHAAZE00000008exon51085455108633-
GWHAAZE00000008exon51093595109527-
GWHAAZE00000008exon51096575109733-
GWHAAZE00000008exon51131085113612-
GWHAAZE00000008CDS51131085113612-
GWHAAZE00000008CDS51096575109733-
GWHAAZE00000008CDS51093595109527-
GWHAAZE00000008CDS51085455108633-
GWHAAZE00000008CDS51082725108436-
GWHAAZE00000008CDS51069975107074-
GWHAAZE00000008CDS51061405106243-
GWHAAZE00000008CDS51056345105739-
GWHAAZE00000008three_prime_UTR51053185105633-
Transcript Sequence

Network for GWHGAAZE026468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23674071.90E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.662
SRR3591706second leaf14.117
SRR3591707mature leaf13.975
SRR3591708Shoot apex16.563
SRR3591709Stem20.186
SRR3591710White floral bud15.195
SRR3591711White flower13.057
SRR3591712Green floral bud17.614
SRR3591713Yellow flower17.402
SRP173429 SRR8316895Juvenile bud stage 10.636
SRR8316896Juvenile bud stage 12.432
SRR8316897Juvenile bud stage 8.195
SRR8316894Third green stage 6.324
SRR8316900Third green stage 17.184
SRR8316901Third green stage 16.562
SRR8316898Complete white stage 9.285
SRR8316899Complete white stage 37.883
SRR8316903Complete white stage 11.710
SRR8316902Silver flowering stage7.344
SRR8316904Silver flowering stage12.793
SRR8316905Silver flowering stage5.973
SRR8316906Gold flowering stage 24.051
SRR8316907Gold flowering stage 21.344
SRR8316908Gold flowering stage 21.294
SRP132670SRR6706286Control13.024
SRR6706287Light intensity 50%14.109
SRR6706288Light intensity 20%14.598
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.569
CNS0095593Slightly white alabastrum(diploid) 215.298
CNS0095594Slightly white alabastrum(diploid) 315.029
CNS0095595Whole white alabastrum(diploid) 216.544
CNS0095596Whole white alabastrum(diploid) 312.204
CNS0095597Whole white alabastrum(diploid) 419.270
CNS0095598Silvery flower (diploied) 111.650
CNS0095599Silvery flower (diploied) 219.577
CNS0095600Silvery flower (diploied) 317.985
CNS0095601Golden flower (diploid) 116.565
CNS0095602Golden flower (diploid) 218.733
CNS0095603Golden flower (diploid) 320.710
CNS0095604Slightly white alabastrum(tetraploid) 113.760
CNS0095605Slightly white alabastrum(tetraploid) 213.053
CNS0095606Slightly white alabastrum(tetraploid) 316.869
CNS0095607Whole white alabastrum(tetraploid) 112.989
CNS0095608Whole white alabastrum(tetraploid) 210.087
CNS0095609Whole white alabastrum(tetraploid) 314.056
CNS0095610Silvery flower (tetraploid) 116.457
CNS0095611Silvery flower (tetraploid) 217.082
CNS0095612Silvery flower (tetraploid) 314.966
CNS0095613Golden flower (tetraploid) 111.176
CNS0095614Golden flower (tetraploid) 215.162
CNS0095615Golden flower (tetraploid) 314.051
CRA001975CRR073297Stem 19.219
CRR073298Stem 210.497
CRR073299Stem 39.651
CRR073300Leaf 113.396
CRR073301Leaf 211.468
CRR073302Leaf 312.125
CRR073303Juvenile bud 111.605
CRR073304Juvenile bud 210.053
CRR073305Juvenile bud 311.397
CRR073306Third green 15.633
CRR073307Third green 24.652
CRR073308Third green 35.239
CRR073309Second white 19.469
CRR073310Second white 27.112
CRR073311Second white 37.374
CRR073312Silver flowering 15.144
CRR073313Silver flowering 26.106
CRR073314Silver flowering 36.867
CRR073315Gold flowering 16.084
CRR073316Gold flowering 210.900
CRR073317Gold flowering 37.140
CRR073318Tawny withering 112.482
CRR073319Tawny withering 214.145
CRR073320Tawny withering 310.583