Gene detail

Detail information of GWHGAAZE026478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658167.1	0	PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X1 [Vitis vinifera]
COG	YP_003951370.1	4E-19	swi/snf family helicase
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	3E-35	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|A0A068UZN7\|A0A068UZN7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP13891.1}
TAIR10	AT2G40770.1	0	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5264490	5290137	+
GWHAAZE00000008	mRNA	5264490	5290137	+
GWHAAZE00000008	exon	5264490	5265280	+
GWHAAZE00000008	exon	5266034	5266240	+
GWHAAZE00000008	exon	5266347	5266408	+
GWHAAZE00000008	exon	5266558	5267029	+
GWHAAZE00000008	exon	5268026	5268220	+
GWHAAZE00000008	exon	5273252	5273507	+
GWHAAZE00000008	exon	5273630	5273653	+
GWHAAZE00000008	exon	5274533	5274773	+
GWHAAZE00000008	exon	5275614	5275771	+
GWHAAZE00000008	exon	5276131	5276691	+
GWHAAZE00000008	exon	5278320	5278486	+
GWHAAZE00000008	exon	5282045	5282261	+
GWHAAZE00000008	exon	5282371	5282577	+
GWHAAZE00000008	exon	5283312	5283428	+
GWHAAZE00000008	exon	5284407	5284649	+
GWHAAZE00000008	exon	5285283	5285490	+
GWHAAZE00000008	exon	5286752	5286957	+
GWHAAZE00000008	exon	5288432	5288583	+
GWHAAZE00000008	exon	5288968	5289232	+
GWHAAZE00000008	exon	5289886	5290137	+
GWHAAZE00000008	CDS	5264490	5265280	+
GWHAAZE00000008	CDS	5266034	5266240	+
GWHAAZE00000008	CDS	5266347	5266408	+
GWHAAZE00000008	CDS	5266558	5267029	+
GWHAAZE00000008	CDS	5268026	5268220	+
GWHAAZE00000008	CDS	5273252	5273507	+
GWHAAZE00000008	CDS	5273630	5273653	+
GWHAAZE00000008	CDS	5274533	5274773	+
GWHAAZE00000008	CDS	5275614	5275771	+
GWHAAZE00000008	CDS	5276131	5276691	+
GWHAAZE00000008	CDS	5278320	5278486	+
GWHAAZE00000008	CDS	5282045	5282261	+
GWHAAZE00000008	CDS	5282371	5282577	+
GWHAAZE00000008	CDS	5283312	5283428	+
GWHAAZE00000008	CDS	5284407	5284649	+
GWHAAZE00000008	CDS	5285283	5285490	+
GWHAAZE00000008	CDS	5286752	5286957	+
GWHAAZE00000008	CDS	5288432	5288583	+
GWHAAZE00000008	CDS	5288968	5289232	+
GWHAAZE00000008	CDS	5289886	5290137	+

Transcript Sequence
>GWHTAAZE026512 ATGGGCCGAAGGAAGCAACTCCGGCCCCACCGATCAGGGGGAAGACTAGAGAGACACGATATTTCAGGGGAATTGAAGGACCAAAATCCATCTGAAACTGAAAAGAATGAGTCTGCTGATCTTGATAAACCATTTTTTGTCGAAATTGATAGGACTAGTTGGGTTTTGGATGAGCATTTTGACATTTCGGAAGTTCTTTTGACGAATTTGAAAGTAAGCACAGAGTTCTACTGTTACAATTGGAGTGAGGAGCTTTATTGCAATTCAGAGTTTTCTCTAAGGTTTCGGTTGGATAATGTAAATGAGTTTCTTGGGCGTATAAAGTTAGGCCATTGGCCTGTTTTGTCTGCTAGTACTATATACTTGGAACTAGTAAAAAATAGTGCAGTGGAGGGCGCGGAAACACACATTGTGATGGTTGTTGGTAATTTCGATGGACCGGACGAAGGTGTTTCAGGGCTTGTTCACTTGGCTAGTATGAAGTTTCTGACATTGAGGCTGATTCCAGGGGTCACCTTGTCAGAGAGCTCGTCTTCTATGATGGTGAGAGTGGAGATACTCAAGAGTGCCTTTGATGCCTCTGACTCACTTCTTGATAATTCAAGGCAGCTTTGGAAAAGAAGTATGGTTAGTGTTATGGCTTGGCTGCGCCCGGAAGTTATTACCTCAGAGGCTAGATATGGCTATAGTGTATCCGCAAACATGGAAATTGATGGTGAAGATTCTTCTGTATCAAGGAAACGGGCTAGGTTTGACGTTGCTGGTTTTTATGATGCTGTTAAGCCATCAAAGGATGCTCTAATGCTGGAGGATCACATGCCTGACTTGCTTCCTGAGCTTAGGCCGTATCAGCGCCGGGCAGTTTATTGGATGGTAGAGCAAGAGAAAGGGGCTTCTTTATGTATGGGTGGAAGTGAAAGAAGCCAGCTCATCTATCCTCTTTGTACACCTGTCACTTTCATCGACTCTTGTTCGAGAATGTTCTACAATTCCTTTAGCGGAAGTGTTTCATTGCATCCGGAGTGCTCCTCACCATATATCTTTGGTGGTATTCTTGCTGACGAGATGGGTTTGGGGAAAACTGTTGAGCTGCTTGCTTGTATCTTTGCTCATCGGATGTCAGCATCGGAAATAGGCAGTATTTCTCATGATGTAATGCAAGTTACTGGGGACCACAAAATTAACATCAAAAGGACAAAAAGAGAGTGTGTTGAGTGTGTATGTGGGGCTGTGACTGAAAGCTCCAGATATAATGGATTATGGGTGCAATGCGATATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGCTATTCAGCCAAAGTGAGAAACTCAAAATCCAGTGAAGTTTCCAAGGGACAAAAGCACATAAGAAGCAAGAAAAGTACCGAAATAGTTGAGATGGATGGGACTCATATCTGCCCATTATGCTCAGAACTGATTGAAGCTGCTGAGTCTCCAATGGCTACTGGTGCAACTCTAATAGTGTGTCCGGCTCCTATACTGCCACAATGGCATTCTGAAATTATTCGTCATACGAATCCAGGTTCACTGAAAACCTATATTTATGAAGGTGTTAGAAACACTTCAGATACGTCTGTTATGGATATTGGTGAACTTCTCAGTGCTGATATTGTCTTAACAACATATGATGTGCTTAAAGAAGACTTATTTCACGACTCTGACAGGCATGAAGGGGATCGTCGCCTTATGAGATTTCACAAGAGATACCCTGTTATTCCAACTCTTCTCACCCGTATATTTTGGTGGAGAATTTGTTTGGACGAGGCTCAAATGGCAGAGAGTAATGCTGCTGCTGCAACAGAAATGGCACTCCGGCTACATGCTAAGCACCGTTGGTGTGTTACGGGAACCCCCATACAACGTAAGCTTGATGATTTATATGGGCTCTTGAGATTTCTTAAAGCAAGTCCATTTGATGTTCTTAGGTGGTGGGCTGAAGTTATACGCGATCCATATGAGCAATGCCTTGGACTAGAATGTGCTAGGGGAGATGCAGGAGCAATGGCATTCACACACAATTTCTTTAAGCAAATAATGTGGCGCTCGTCAAAAATACATGTTGCGGAAGAGTTACAGATTCCTCCGCAGGAGGAAAGTCTTTATTGGCTCTCTTTCTCACCAATTGAAGCGCACTTTTATCAGAGGCAGCATGAAACTTGTGTGGTCTATGCTCGTGAAGTTATGGAGAGTTTCAGAGGCGATATACTCAAAAGGAAAGTTGCAGGTTCAAAGTCATCTGATCATTTGCTCACCCATTTTGAGGCTGCAAAGCTATTGAACTCACTCTTGAAGCTTCGCCAAGCTTGCTGCCATCCTCAAGTGGGAAGGTCAGGGCTACGTTCTTTGCAACAGTCTCCCATGACCATGGAGGACATACTATTGGTTCTTGTAGGTAAGACCAAGGTAGAAGGAGAGGAAGCTCTTAGGAAATTAATTGTTGCATTGAACGGACTTGCAGCAATATCTATAATCAAGCAAGATTTTCCTCAAGCAGTATCACTGTACAAAGAAGCTTTGGCATTCGCTGAAGAGCATTCTGAAGATTTTCGTTTGGACCCTTTGTTAAATATTCACATTCATCATAATCTAGGTGAGATACTACCGTTGACTTTGAACTCTAAGCAACAAGCTCAGAGTAATGTACAGTTCTCTCAAAGCTCTAAAGACAATGTGAGGATGTGTGCTGTTGAAGAATGCAATCAACGTGCTCCGAAGAGGACTAAAGTGAGTAGAGAAGAAACCTCAGATTTGACCAATGATTCTGGGAATTTACCTTCTGACCCTTTGGCAAATGGCTTATGTGGTGACCAAAATTGTGAAGTTAGTACCAGCAACGACCAGTGTTTGAGATTGGCATGTGAGAATCTTAAACAGAAATTTTTATCTGTGTTCAATACAAAGATATCTGTGGCTCAGCAAGATTTCCGAAAGTCATATGGACAGATAAGTAAGGCACTTAGCGATAGGAGAAATCAACAAACAACCTGGTGGTTGGAAGCTCTAGATCACATTGAGCAAAACAAGGATTCCTCAAGCGAGTTGTTGAGAAAGATGGGAGAAGCCGTCTCTGGGACTCTAAACACTTCTAGAACGACGAGAATTGCATCCTGCTTTCGGAGCACTACCACTCTCAAGTATTATATACAGACTGGTTTGGATTCATTGGAAGATTCTAGAAAAACTCTACTTGATAGACTTTTGGAGATTGACCAGTCAATGGAAAATCCAAGAGAGGAGGATATTGAACGAGTGAGATACTGTCCAAACTGCCAAGCTAACGGTGATGGTCCCCTATGTGTTCATTGTGAACTAGATGAATTATTTCAGGTTTACGAGGCTAGGCTCTTCCGTCTTAACAAAGGAAACAATGGAGGAATAATTACTTCTGTTGACGAAGCAGTAGACCTTCAAAAGAAGAAGTCTGCACTGAATCGTTTCTATTGGAATTTGTCGCAAGGTGACAAAAATTCTACTTCGTCGAGCATGCAGGATGAAGATGAAGGAAAGAAGAGGGATGTTGGGGAGAAAGTTATGGTTTCAAAATCTCCTTCCGAATTGGAAGTCGTTCTTGGGATTATAAAGAGCTCCTCTAAGGCTCTTTTAGGTAGAGAAGTTATGTCAGCAGCCACAAAGGAGCTAGGTTTACTTGAGGGGATGCGTAAGGAGTATGCACAAGCAAGGTCCTTGGCAATTGCTCAAGCTCAAGTTCTGCGCGCTCATGATGAAATAAAGATGGCAACCTCTCGATTGCGCCTAAGAGAAAATGTGGACGACAAATCTATCGATGCTTTAGGCACGGAAGAATTAGACATAGCAAGCGCTGAAAATTCTAGTGAAAAATTTCTGGCTTTGTCCTCATTATTACGTATAAAGGGGCAACTTCGTTATTTGAAGGGTTTGGTACAATCTAAACAGAATCTGCATTTGGAAAGCACAGATAATTCAGCCCTAAATCAAGTAACAGAAAATTCAGTGTCAACTCCTAGAGAAAGAGAGAATGAATGCCTAGTTAAAGCTGGCGAGGAATCTTGCCCAGTTTGTCAAGAAAAACTCAGTAATCAAAAGATGGTTTTTCAATGTGGGCATGTTACTTGTTGTAAATGTTTATTTGCAATGACTGAGCGGAGAGAGGTTCATCAAGGAAGGTTTCAGAGTAAATGGGTAATGTGTCCAACATGTCGACAACATACAGATTATGGGAATATTGCTTTTGTCGACGATAGACATAATAAATCATGTAATCGTATGTTTCAAGATGGTGAAAACACTGAAGATTCTATAATTGTCCAGGGTTCATATAGTACAAAGATTGAAGCAGTTACAAGGAGAATTTTATGGATCAATTCAGAAAATCCAGAAGCCAAAGTTCTTGTTTTCTCTAGTTGGAATGACGTCCTTGACGTGTTGGAACACGCCTTCACTGCTAATAGTATAAGTTTTATCAGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGCCACTTCAAAGGAGAGAAAACCAATGTAAGAGGAAGTGGAAAAATACACAATGGGAAACCTGAAACCAAAGGTGTTCAGGTTTTACTGCTTTTAATTCAGCATGGAGCCAATGGTCTCAATCTATTGGAAGCGCAACACGTTATTCTAGTAGAGCCACTACTCAATCCTGCAGCAGAAGCACAAGCAATCAGCAGGGTGCATCGAATTGGACAGAAGAATAAGACCCTCGTTCATCGTTTCATCGTGAAAGACACAGTTGAAGAGAGCTTGTACAAGCTGAACAAAAGCAGGAATACCGGTTCATTCCTCAGCGGAAACAAGAAGAATCAAGATCAACCCGTTTTAACACTTAAAGATGTCGAATCTTTATTCACAGTTGCTTCCTCCACCATACCCGAAGGCCAAGAAATGCCCAATGAGAGCTTAATGCATTTGCCACCTTCTGTGGCCGCCGTTGCAGCTGCTGAGAGGAGACTAAGGGAGCAAACGACGTAA

Network for GWHGAAZE026478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	283	782	5.60E-84
PF00097.26	zf-C3HC4	1352	1401	9.20E-05

Protein Sequence

>GWHPAAZE026496
MGRRKQLRPHRSGGRLERHDISGELKDQNPSETEKNESADLDKPFFVEIDRTSWVLDEHFDISEVLLTNLKVSTEFYCYNWSEELYCNSEFSLRFRLDNVNEFLGRIKLGHWPVLSASTIYLELVKNSAVEGAETHIVMVVGNFDGPDEGVSGLVHLASMKFLTLRLIPGVTLSESSSSMMVRVEILKSAFDASDSLLDNSRQLWKRSMVSVMAWLRPEVITSEARYGYSVSANMEIDGEDSSVSRKRARFDVAGFYDAVKPSKDALMLEDHMPDLLPELRPYQRRAVYWMVEQEKGASLCMGGSERSQLIYPLCTPVTFIDSCSRMFYNSFSGSVSLHPECSSPYIFGGILADEMGLGKTVELLACIFAHRMSASEIGSISHDVMQVTGDHKINIKRTKRECVECVCGAVTESSRYNGLWVQCDICDAWQHADCVGYSAKVRNSKSSEVSKGQKHIRSKKSTEIVEMDGTHICPLCSELIEAAESPMATGATLIVCPAPILPQWHSEIIRHTNPGSLKTYIYEGVRNTSDTSVMDIGELLSADIVLTTYDVLKEDLFHDSDRHEGDRRLMRFHKRYPVIPTLLTRIFWWRICLDEAQMAESNAAAATEMALRLHAKHRWCVTGTPIQRKLDDLYGLLRFLKASPFDVLRWWAEVIRDPYEQCLGLECARGDAGAMAFTHNFFKQIMWRSSKIHVAEELQIPPQEESLYWLSFSPIEAHFYQRQHETCVVYAREVMESFRGDILKRKVAGSKSSDHLLTHFEAAKLLNSLLKLRQACCHPQVGRSGLRSLQQSPMTMEDILLVLVGKTKVEGEEALRKLIVALNGLAAISIIKQDFPQAVSLYKEALAFAEEHSEDFRLDPLLNIHIHHNLGEILPLTLNSKQQAQSNVQFSQSSKDNVRMCAVEECNQRAPKRTKVSREETSDLTNDSGNLPSDPLANGLCGDQNCEVSTSNDQCLRLACENLKQKFLSVFNTKISVAQQDFRKSYGQISKALSDRRNQQTTWWLEALDHIEQNKDSSSELLRKMGEAVSGTLNTSRTTRIASCFRSTTTLKYYIQTGLDSLEDSRKTLLDRLLEIDQSMENPREEDIERVRYCPNCQANGDGPLCVHCELDELFQVYEARLFRLNKGNNGGIITSVDEAVDLQKKKSALNRFYWNLSQGDKNSTSSSMQDEDEGKKRDVGEKVMVSKSPSELEVVLGIIKSSSKALLGREVMSAATKELGLLEGMRKEYAQARSLAIAQAQVLRAHDEIKMATSRLRLRENVDDKSIDALGTEELDIASAENSSEKFLALSSLLRIKGQLRYLKGLVQSKQNLHLESTDNSALNQVTENSVSTPRERENECLVKAGEESCPVCQEKLSNQKMVFQCGHVTCCKCLFAMTERREVHQGRFQSKWVMCPTCRQHTDYGNIAFVDDRHNKSCNRMFQDGENTEDSIIVQGSYSTKIEAVTRRILWINSENPEAKVLVFSSWNDVLDVLEHAFTANSISFIRMKGGRKAHVAISHFKGEKTNVRGSGKIHNGKPETKGVQVLLLLIQHGANGLNLLEAQHVILVEPLLNPAAEAQAISRVHRIGQKNKTLVHRFIVKDTVEESLYKLNKSRNTGSFLSGNKKNQDQPVLTLKDVESLFTVASSTIPEGQEMPNESLMHLPPSVAAVAAAERRLREQTT

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.945
	SRR3591706	second leaf	5.048
	SRR3591707	mature leaf	4.045
	SRR3591708	Shoot apex	7.062
	SRR3591709	Stem	6.716
	SRR3591710	White floral bud	4.567
	SRR3591711	White flower	5.058
	SRR3591712	Green floral bud	4.566
	SRR3591713	Yellow flower	4.551
SRP173429	SRR8316895	Juvenile bud stage	5.047
	SRR8316896	Juvenile bud stage	6.525
	SRR8316897	Juvenile bud stage	3.482
	SRR8316894	Third green stage	3.187
	SRR8316900	Third green stage	6.428
	SRR8316901	Third green stage	6.470
	SRR8316898	Complete white stage	1.835
	SRR8316899	Complete white stage	4.662
	SRR8316903	Complete white stage	3.825
	SRR8316902	Silver flowering stage	1.991
	SRR8316904	Silver flowering stage	3.925
	SRR8316905	Silver flowering stage	1.590
	SRR8316906	Gold flowering stage	5.107
	SRR8316907	Gold flowering stage	3.498
	SRR8316908	Gold flowering stage	5.224
SRP132670	SRR6706286	Control	6.278
	SRR6706287	Light intensity 50%	6.572
	SRR6706288	Light intensity 20%	6.569
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.053
	CNS0095593	Slightly white alabastrum(diploid) 2	4.045
	CNS0095594	Slightly white alabastrum(diploid) 3	4.063
	CNS0095595	Whole white alabastrum(diploid) 2	4.999
	CNS0095596	Whole white alabastrum(diploid) 3	4.062
	CNS0095597	Whole white alabastrum(diploid) 4	5.771
	CNS0095598	Silvery flower (diploied) 1	5.816
	CNS0095599	Silvery flower (diploied) 2	4.131
	CNS0095600	Silvery flower (diploied) 3	7.148
	CNS0095601	Golden flower (diploid) 1	5.436
	CNS0095602	Golden flower (diploid) 2	7.681
	CNS0095603	Golden flower (diploid) 3	7.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.282
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.391
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.336
	CNS0095610	Silvery flower (tetraploid) 1	6.364
	CNS0095611	Silvery flower (tetraploid) 2	7.498
	CNS0095612	Silvery flower (tetraploid) 3	6.758
	CNS0095613	Golden flower (tetraploid) 1	2.776
	CNS0095614	Golden flower (tetraploid) 2	5.227
	CNS0095615	Golden flower (tetraploid) 3	5.857
CRA001975	CRR073297	Stem 1	7.877
	CRR073298	Stem 2	7.198
	CRR073299	Stem 3	4.463
	CRR073300	Leaf 1	7.051
	CRR073301	Leaf 2	6.180
	CRR073302	Leaf 3	4.203
	CRR073303	Juvenile bud 1	4.017
	CRR073304	Juvenile bud 2	3.190
	CRR073305	Juvenile bud 3	4.905
	CRR073306	Third green 1	1.891
	CRR073307	Third green 2	1.425
	CRR073308	Third green 3	2.246
	CRR073309	Second white 1	1.748
	CRR073310	Second white 2	2.910
	CRR073311	Second white 3	3.490
	CRR073312	Silver flowering 1	2.104
	CRR073313	Silver flowering 2	1.994
	CRR073314	Silver flowering 3	1.970
	CRR073315	Gold flowering 1	1.861
	CRR073316	Gold flowering 2	4.178
	CRR073317	Gold flowering 3	1.883
	CRR073318	Tawny withering 1	3.552
	CRR073319	Tawny withering 2	4.077
	CRR073320	Tawny withering 3	2.393