Gene detail

Detail information of GWHGAAZE026480

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002520871.1	1.83998E-64	WRKY transcription factor, putative [Ricinus communis]
Swissprot	tr\|Q93WU8\|WRK54_ARATH	5E-43	Probable WRKY transcription factor 54
trEMBL	tr\|B9S4F2\|B9S4F2_RICCO	7E-65	WRKY transcription factor, putative {ECO:0000313\|EMBL:EEF41580.1}
TAIR10	AT2G40750.1	1E-37	WRKY DNA-binding protein 54

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5311687	5314139	+
GWHAAZE00000008	mRNA	5311687	5314139	+
GWHAAZE00000008	exon	5311687	5312116	+
GWHAAZE00000008	exon	5312887	5312988	+
GWHAAZE00000008	exon	5313698	5314139	+
GWHAAZE00000008	five_prime_UTR	5311687	5311763	+
GWHAAZE00000008	CDS	5311764	5312116	+
GWHAAZE00000008	CDS	5312887	5312988	+
GWHAAZE00000008	CDS	5313698	5314139	+

Transcript Sequence
>GWHTAAZE026514 CCTTTTCACTCTCTACCCACACACAGATATATATATACATATATCTAAGCTTAATTTGGATAACCTCAAATTAACCCATGGAAAAATCTGTGCCAGAAAATTCCTCCAAAAGGAGAATGGTAATAACAGAGCTAGTTCAGGGCCGAGAATTTGCAACCCAACTTCGAATTTTACTTGATAATAATAAAAACAATTCCTTTATTGGAGATGATTGCTCTGTTTCTGCAGAGCAACTTGTGATGAAAATACTGGGATCTTTCACTGAGACTCTATCTGTTTTGAGTTCCGGTGATGGGTCCGCCGGAGGACGTCAGATTCCGGCGAGTGCTCAAGTGGGTTCGAGTTGTTCCGGCGATCGGGAGTCTCAGGATTCCGGCGAGAGTATGAAGAGGCCGACCCTGGTGGATCGGAGAGGGCGTTATAAGAGAAGAAAAAGCTCAGAGTCAAGGATAACAATCTCACCCACAATAGAAGACGGGTATGCATGGAGAAAATATGGACAGAAGGACATCCTCAATGACAAATATCCAAGGTGCTACTTCAGATGCACGCACAAGAACGATCAAGGTTGCAAAGCGCTTAAACAAGTTCAAAAAATCGATGAAGGTGGCCATACCGTGTACCGTATCACGTATTTTGGTGAGCATGTATGCAGTGGAACAAAGAATTCTCTGTTTCAGCCCATTTCAGAAAACGAAAGTACATCTTTTATGCTTAGTTTTGAATCAAGTAAAATCCCAAGTAATAATAAACAATTAGTTCATAATCCTCCTCTGAAAGAGGAGACAAATTCCTCTATGGATTCTGTTCTGTGGAAGGATCTAATGTTGGAATCATCTGATCATGAAGATGATGTGCTTTCTAGTGTTCATTCATGTGCTTCAACCACTTCAATTGGATTGGACATGGGGGATTTGATTAGGTGTGTTGATTTTGACAATAATTTTAGGTTTGACGAGATTGGGTTATTTTAA

Network for GWHGAAZE026480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	132	192	5.70E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.366
	SRR3591706	second leaf	47.883
	SRR3591707	mature leaf	28.432
	SRR3591708	Shoot apex	54.113
	SRR3591709	Stem	185.584
	SRR3591710	White floral bud	38.814
	SRR3591711	White flower	136.478
	SRR3591712	Green floral bud	33.161
	SRR3591713	Yellow flower	82.217
SRP173429	SRR8316895	Juvenile bud stage	147.858
	SRR8316896	Juvenile bud stage	127.496
	SRR8316897	Juvenile bud stage	88.492
	SRR8316894	Third green stage	11.016
	SRR8316900	Third green stage	23.725
	SRR8316901	Third green stage	59.634
	SRR8316898	Complete white stage	1.023
	SRR8316899	Complete white stage	111.400
	SRR8316903	Complete white stage	1.993
	SRR8316902	Silver flowering stage	6.069
	SRR8316904	Silver flowering stage	5.036
	SRR8316905	Silver flowering stage	4.726
	SRR8316906	Gold flowering stage	19.323
	SRR8316907	Gold flowering stage	11.844
	SRR8316908	Gold flowering stage	23.350
SRP132670	SRR6706286	Control	53.098
	SRR6706287	Light intensity 50%	55.739
	SRR6706288	Light intensity 20%	40.553
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.461
	CNS0095593	Slightly white alabastrum(diploid) 2	103.294
	CNS0095594	Slightly white alabastrum(diploid) 3	95.277
	CNS0095595	Whole white alabastrum(diploid) 2	37.562
	CNS0095596	Whole white alabastrum(diploid) 3	17.283
	CNS0095597	Whole white alabastrum(diploid) 4	29.246
	CNS0095598	Silvery flower (diploied) 1	64.252
	CNS0095599	Silvery flower (diploied) 2	71.345
	CNS0095600	Silvery flower (diploied) 3	52.157
	CNS0095601	Golden flower (diploid) 1	334.729
	CNS0095602	Golden flower (diploid) 2	150.922
	CNS0095603	Golden flower (diploid) 3	154.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.831
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.405
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.890
	CNS0095610	Silvery flower (tetraploid) 1	21.875
	CNS0095611	Silvery flower (tetraploid) 2	9.893
	CNS0095612	Silvery flower (tetraploid) 3	6.214
	CNS0095613	Golden flower (tetraploid) 1	17.772
	CNS0095614	Golden flower (tetraploid) 2	13.275
	CNS0095615	Golden flower (tetraploid) 3	5.874
CRA001975	CRR073297	Stem 1	19.839
	CRR073298	Stem 2	14.919
	CRR073299	Stem 3	17.735
	CRR073300	Leaf 1	9.287
	CRR073301	Leaf 2	28.969
	CRR073302	Leaf 3	11.447
	CRR073303	Juvenile bud 1	11.838
	CRR073304	Juvenile bud 2	9.077
	CRR073305	Juvenile bud 3	25.571
	CRR073306	Third green 1	2.886
	CRR073307	Third green 2	2.080
	CRR073308	Third green 3	4.709
	CRR073309	Second white 1	0.566
	CRR073310	Second white 2	1.004
	CRR073311	Second white 3	0.273
	CRR073312	Silver flowering 1	1.267
	CRR073313	Silver flowering 2	2.219
	CRR073314	Silver flowering 3	3.701
	CRR073315	Gold flowering 1	249.639
	CRR073316	Gold flowering 2	214.136
	CRR073317	Gold flowering 3	169.007
	CRR073318	Tawny withering 1	39.326
	CRR073319	Tawny withering 2	91.849
	CRR073320	Tawny withering 3	41.963