Detail information of GWHGAAZE026489


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007021424.14.5864E-171Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
COGYP_007824.13E-653-deoxy-manno-octulosonate cytidylyltransferase
Swissprottr|Q9C920|KDSB_ARATH2E-1603-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial (Precursor)
trEMBLtr|A0A061F6F5|A0A061F6F5_THECC2E-171Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 {ECO:0000313|EMBL:EOY12950.1}
TAIR10AT1G53000.12E-113Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene54299675433320-
GWHAAZE00000008mRNA54299675433320-
GWHAAZE00000008exon54299675430059-
GWHAAZE00000008exon54302685430378-
GWHAAZE00000008exon54304765430527-
GWHAAZE00000008exon54306295430768-
GWHAAZE00000008exon54313115431435-
GWHAAZE00000008exon54315225431626-
GWHAAZE00000008exon54320435432151-
GWHAAZE00000008exon54330665433320-
GWHAAZE00000008CDS54330665433320-
GWHAAZE00000008CDS54320435432151-
GWHAAZE00000008CDS54315225431626-
GWHAAZE00000008CDS54313115431435-
GWHAAZE00000008CDS54306295430768-
GWHAAZE00000008CDS54304765430527-
GWHAAZE00000008CDS54302685430378-
GWHAAZE00000008CDS54299675430059-
Transcript Sequence

Network for GWHGAAZE026489

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02348.20CTP_transf_359854.20E-08
PF02348.20CTP_transf_31202952.40E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00979kdsB Metabolic pathways map01100
Lipopolysaccharide biosynthesismap00540

Gene Ontology

GO term OntologyName
GO:0008690molecular_function3-deoxy-manno-octulosonate cytidylyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf114.102
SRR3591706second leaf79.303
SRR3591707mature leaf54.782
SRR3591708Shoot apex78.194
SRR3591709Stem73.955
SRR3591710White floral bud38.641
SRR3591711White flower34.570
SRR3591712Green floral bud55.821
SRR3591713Yellow flower29.740
SRP173429 SRR8316895Juvenile bud stage 34.866
SRR8316896Juvenile bud stage 42.852
SRR8316897Juvenile bud stage 29.358
SRR8316894Third green stage 21.316
SRR8316900Third green stage 61.888
SRR8316901Third green stage 55.115
SRR8316898Complete white stage 23.744
SRR8316899Complete white stage 64.951
SRR8316903Complete white stage 34.202
SRR8316902Silver flowering stage14.353
SRR8316904Silver flowering stage21.737
SRR8316905Silver flowering stage10.170
SRR8316906Gold flowering stage 27.623
SRR8316907Gold flowering stage 35.578
SRR8316908Gold flowering stage 34.403
SRP132670SRR6706286Control33.747
SRR6706287Light intensity 50%38.239
SRR6706288Light intensity 20%41.061
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.996
CNS0095593Slightly white alabastrum(diploid) 241.163
CNS0095594Slightly white alabastrum(diploid) 334.470
CNS0095595Whole white alabastrum(diploid) 242.855
CNS0095596Whole white alabastrum(diploid) 343.956
CNS0095597Whole white alabastrum(diploid) 446.908
CNS0095598Silvery flower (diploied) 148.383
CNS0095599Silvery flower (diploied) 235.711
CNS0095600Silvery flower (diploied) 350.138
CNS0095601Golden flower (diploid) 143.907
CNS0095602Golden flower (diploid) 250.810
CNS0095603Golden flower (diploid) 352.618
CNS0095604Slightly white alabastrum(tetraploid) 148.833
CNS0095605Slightly white alabastrum(tetraploid) 247.972
CNS0095606Slightly white alabastrum(tetraploid) 367.785
CNS0095607Whole white alabastrum(tetraploid) 138.621
CNS0095608Whole white alabastrum(tetraploid) 237.943
CNS0095609Whole white alabastrum(tetraploid) 361.846
CNS0095610Silvery flower (tetraploid) 150.947
CNS0095611Silvery flower (tetraploid) 259.017
CNS0095612Silvery flower (tetraploid) 353.410
CNS0095613Golden flower (tetraploid) 150.201
CNS0095614Golden flower (tetraploid) 259.718
CNS0095615Golden flower (tetraploid) 336.916
CRA001975CRR073297Stem 138.510
CRR073298Stem 233.318
CRR073299Stem 334.935
CRR073300Leaf 136.635
CRR073301Leaf 234.595
CRR073302Leaf 339.043
CRR073303Juvenile bud 136.719
CRR073304Juvenile bud 225.870
CRR073305Juvenile bud 333.673
CRR073306Third green 111.950
CRR073307Third green 212.227
CRR073308Third green 313.747
CRR073309Second white 119.997
CRR073310Second white 222.648
CRR073311Second white 316.492
CRR073312Silver flowering 117.440
CRR073313Silver flowering 222.127
CRR073314Silver flowering 311.143
CRR073315Gold flowering 131.794
CRR073316Gold flowering 246.898
CRR073317Gold flowering 326.645
CRR073318Tawny withering 132.897
CRR073319Tawny withering 224.937
CRR073320Tawny withering 332.861