Detail information of GWHGAAZE026493


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGE10598.18.0179E-148chalcone isomerase [Lonicera japonica]
Swissprottr|Q8VZW3|CFI3_ARATH2E-89Probable chalcone--flavonone isomerase 3
trEMBLtr|L7Z972|L7Z972_LONJA3E-148Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158}
TAIR10AT5G05270.26E-69Chalcone-flavanone isomerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene54920635495331+
GWHAAZE00000008mRNA54920635495331+
GWHAAZE00000008exon54920635492141+
GWHAAZE00000008exon54922515492406+
GWHAAZE00000008exon54946085494834+
GWHAAZE00000008exon54951705495331+
GWHAAZE00000008CDS54920635492141+
GWHAAZE00000008CDS54922515492406+
GWHAAZE00000008CDS54946085494834+
GWHAAZE00000008CDS54951705495331+
Transcript Sequence

Network for GWHGAAZE026493

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02431.16Chalcone62029.10E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01859E5.5.1.6 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Flavonoid biosynthesismap00941

Gene Ontology

GO term OntologyName
GO:0016872molecular_functionintramolecular lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.327
SRR3591706second leaf370.832
SRR3591707mature leaf27.516
SRR3591708Shoot apex226.481
SRR3591709Stem174.392
SRR3591710White floral bud27.186
SRR3591711White flower17.673
SRR3591712Green floral bud60.338
SRR3591713Yellow flower1.788
SRP173429 SRR8316895Juvenile bud stage 38.882
SRR8316896Juvenile bud stage 54.949
SRR8316897Juvenile bud stage 25.860
SRR8316894Third green stage 29.557
SRR8316900Third green stage 134.440
SRR8316901Third green stage 135.820
SRR8316898Complete white stage 14.461
SRR8316899Complete white stage 81.786
SRR8316903Complete white stage 25.353
SRR8316902Silver flowering stage5.696
SRR8316904Silver flowering stage8.821
SRR8316905Silver flowering stage3.783
SRR8316906Gold flowering stage 9.313
SRR8316907Gold flowering stage 8.566
SRR8316908Gold flowering stage 13.282
SRP132670SRR6706286Control84.300
SRR6706287Light intensity 50%92.243
SRR6706288Light intensity 20%113.700
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.563
CNS0095593Slightly white alabastrum(diploid) 246.677
CNS0095594Slightly white alabastrum(diploid) 380.768
CNS0095595Whole white alabastrum(diploid) 250.284
CNS0095596Whole white alabastrum(diploid) 345.969
CNS0095597Whole white alabastrum(diploid) 450.442
CNS0095598Silvery flower (diploied) 126.321
CNS0095599Silvery flower (diploied) 219.974
CNS0095600Silvery flower (diploied) 313.776
CNS0095601Golden flower (diploid) 121.895
CNS0095602Golden flower (diploid) 211.525
CNS0095603Golden flower (diploid) 39.957
CNS0095604Slightly white alabastrum(tetraploid) 156.954
CNS0095605Slightly white alabastrum(tetraploid) 236.892
CNS0095606Slightly white alabastrum(tetraploid) 396.481
CNS0095607Whole white alabastrum(tetraploid) 123.678
CNS0095608Whole white alabastrum(tetraploid) 223.955
CNS0095609Whole white alabastrum(tetraploid) 391.816
CNS0095610Silvery flower (tetraploid) 110.883
CNS0095611Silvery flower (tetraploid) 26.288
CNS0095612Silvery flower (tetraploid) 36.568
CNS0095613Golden flower (tetraploid) 17.338
CNS0095614Golden flower (tetraploid) 28.562
CNS0095615Golden flower (tetraploid) 31.617
CRA001975CRR073297Stem 121.247
CRR073298Stem 218.715
CRR073299Stem 310.652
CRR073300Leaf 129.851
CRR073301Leaf 233.579
CRR073302Leaf 343.250
CRR073303Juvenile bud 143.761
CRR073304Juvenile bud 222.265
CRR073305Juvenile bud 329.562
CRR073306Third green 14.035
CRR073307Third green 22.653
CRR073308Third green 33.344
CRR073309Second white 12.527
CRR073310Second white 22.787
CRR073311Second white 30.682
CRR073312Silver flowering 10.765
CRR073313Silver flowering 20.650
CRR073314Silver flowering 30.487
CRR073315Gold flowering 129.303
CRR073316Gold flowering 211.709
CRR073317Gold flowering 312.826
CRR073318Tawny withering 115.156
CRR073319Tawny withering 222.055
CRR073320Tawny withering 38.310