Detail information of GWHGAAZE026494


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007011313.12.17605E-93RING/U-box superfamily protein [Theobroma cacao]
Swissprottr|Q9SG96|ATL72_ARATH2E-54RING-H2 finger protein ATL72
trEMBLtr|A0A061FT40|A0A061FT40_THECC8E-94RING/U-box superfamily protein {ECO:0000313|EMBL:EOY20123.1}
TAIR10AT3G10910.14E-34RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene55010535501799-
GWHAAZE00000008mRNA55010535501799-
GWHAAZE00000008exon55012185501799-
GWHAAZE00000008exon55010535501133-
GWHAAZE00000008CDS55012185501799-
GWHAAZE00000008CDS55010535501133-
Transcript Sequence

Network for GWHGAAZE026494

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21151584.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.188
SRR3591706second leaf63.031
SRR3591707mature leaf105.216
SRR3591708Shoot apex45.771
SRR3591709Stem64.328
SRR3591710White floral bud64.327
SRR3591711White flower56.371
SRR3591712Green floral bud32.025
SRR3591713Yellow flower38.845
SRP173429 SRR8316895Juvenile bud stage 5.591
SRR8316896Juvenile bud stage 5.128
SRR8316897Juvenile bud stage 1.757
SRR8316894Third green stage 7.939
SRR8316900Third green stage 19.046
SRR8316901Third green stage 15.717
SRR8316898Complete white stage 36.599
SRR8316899Complete white stage 44.913
SRR8316903Complete white stage 48.485
SRR8316902Silver flowering stage14.336
SRR8316904Silver flowering stage23.224
SRR8316905Silver flowering stage9.693
SRR8316906Gold flowering stage 20.942
SRR8316907Gold flowering stage 22.949
SRR8316908Gold flowering stage 19.333
SRP132670SRR6706286Control27.606
SRR6706287Light intensity 50%25.357
SRR6706288Light intensity 20%23.205
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.705
CNS0095593Slightly white alabastrum(diploid) 28.322
CNS0095594Slightly white alabastrum(diploid) 38.448
CNS0095595Whole white alabastrum(diploid) 26.466
CNS0095596Whole white alabastrum(diploid) 36.725
CNS0095597Whole white alabastrum(diploid) 47.663
CNS0095598Silvery flower (diploied) 121.290
CNS0095599Silvery flower (diploied) 218.711
CNS0095600Silvery flower (diploied) 355.778
CNS0095601Golden flower (diploid) 118.781
CNS0095602Golden flower (diploid) 244.071
CNS0095603Golden flower (diploid) 342.553
CNS0095604Slightly white alabastrum(tetraploid) 114.635
CNS0095605Slightly white alabastrum(tetraploid) 212.078
CNS0095606Slightly white alabastrum(tetraploid) 330.199
CNS0095607Whole white alabastrum(tetraploid) 112.392
CNS0095608Whole white alabastrum(tetraploid) 28.306
CNS0095609Whole white alabastrum(tetraploid) 319.529
CNS0095610Silvery flower (tetraploid) 168.259
CNS0095611Silvery flower (tetraploid) 277.290
CNS0095612Silvery flower (tetraploid) 355.310
CNS0095613Golden flower (tetraploid) 139.897
CNS0095614Golden flower (tetraploid) 258.996
CNS0095615Golden flower (tetraploid) 346.855
CRA001975CRR073297Stem 123.131
CRR073298Stem 217.485
CRR073299Stem 319.931
CRR073300Leaf 123.950
CRR073301Leaf 222.176
CRR073302Leaf 321.826
CRR073303Juvenile bud 130.000
CRR073304Juvenile bud 229.986
CRR073305Juvenile bud 336.162
CRR073306Third green 143.626
CRR073307Third green 248.752
CRR073308Third green 345.974
CRR073309Second white 117.247
CRR073310Second white 213.362
CRR073311Second white 311.286
CRR073312Silver flowering 17.284
CRR073313Silver flowering 27.442
CRR073314Silver flowering 36.762
CRR073315Gold flowering 124.704
CRR073316Gold flowering 220.600
CRR073317Gold flowering 342.531
CRR073318Tawny withering 137.137
CRR073319Tawny withering 226.735
CRR073320Tawny withering 332.020