Gene detail

Detail information of GWHGAAZE026496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076587.1	7.24388E-86	PREDICTED: transcription factor RF2b-like [Sesamum indicum]
Swissprot	tr\|Q6S4P4\|RF2B_ORYSJ	3E-64	Transcription factor RF2b
trEMBL	tr\|F6HC81\|F6HC81_VITVI	2E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49793.1}
TAIR10	AT1G06850.1	3E-47	basic leucine-zipper 52

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5529054	5531296	+
GWHAAZE00000008	mRNA	5529054	5531296	+
GWHAAZE00000008	exon	5529054	5529194	+
GWHAAZE00000008	exon	5530069	5530153	+
GWHAAZE00000008	exon	5530716	5531296	+
GWHAAZE00000008	CDS	5529054	5529194	+
GWHAAZE00000008	CDS	5530069	5530153	+
GWHAAZE00000008	CDS	5530716	5531062	+
GWHAAZE00000008	three_prime_UTR	5531063	5531296	+

Transcript Sequence
>GWHTAAZE026530 ATGTTCAGGATTTTGGCAAATCGACAATCTGCTGCTCGTTCAAAAGAGAGGAAGGCACGTTATATATCTGAACTTGAGAGAAAAGTTCAGACCCTTCAAACAGAAGCAACCACCCTTTCTGCGCAGCTCACACTGTTCCAGCGGGACACAACGGGCCTGTCTTCAGAAAACACCGAGCTCAAGCTCCGCTTACAAGCTATGGAACAACAAGCTCATTTGCGTGATGCTCTGAATGAAGCACTGAAGCAGGAAGTCGAAAGGCTGAGAATCGCCACCGGAGAAATGTCAAACCAGTCAGATGCATACGATTTGGGAATGCACCATTTTCCATATAACCAATCTGCCTTCTTCTCACACCAGCCCCAACCAGGCCCCGCTGACCCTTCAATGCAACGGTTCCACCCACTCCAGTCAACTCACCAGCACCCTCTGCTTGTTCTCAATGAGCCGGGCTCGCACCAGGACCCCCTTGGCCGGTTCCAGGGGCTTGATATCAGTAACCGGGGAGGCCCTCATCTGGTGAAATCCGAAGGACCGTCCATTTCTGCCAGCGAAAGCAGTAGTACATTGTGAGTAGAATCCGCTCGCCCCTATTCGTTAGATTTGTTCATAGACTGACACCTTGTTAGCCATTTCTTTAAAATTTGATTTAATTTTTATTTAATTGGGGAGTCTTAGATTCTCAGTAGCTTTAACTGGTCTTGTGACATTCACTGTTGTTGTTGTGGGTTTCTCTTCATTTTCTTTTCAACCCAATGGGTAATACAGACATTTTAATGATACTTTTTTATTTATTTTATTTTATTT

Network for GWHGAAZE026496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	4	56	7.80E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.948
	SRR3591706	second leaf	26.962
	SRR3591707	mature leaf	9.003
	SRR3591708	Shoot apex	36.089
	SRR3591709	Stem	15.570
	SRR3591710	White floral bud	11.665
	SRR3591711	White flower	4.580
	SRR3591712	Green floral bud	26.952
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	19.449
	SRR8316896	Juvenile bud stage	22.607
	SRR8316897	Juvenile bud stage	11.903
	SRR8316894	Third green stage	8.487
	SRR8316900	Third green stage	27.968
	SRR8316901	Third green stage	29.503
	SRR8316898	Complete white stage	3.948
	SRR8316899	Complete white stage	42.194
	SRR8316903	Complete white stage	6.972
	SRR8316902	Silver flowering stage	0.801
	SRR8316904	Silver flowering stage	1.303
	SRR8316905	Silver flowering stage	0.339
	SRR8316906	Gold flowering stage	0.349
	SRR8316907	Gold flowering stage	0.104
	SRR8316908	Gold flowering stage	0.935
SRP132670	SRR6706286	Control	21.720
	SRR6706287	Light intensity 50%	20.066
	SRR6706288	Light intensity 20%	21.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.360
	CNS0095593	Slightly white alabastrum(diploid) 2	28.937
	CNS0095594	Slightly white alabastrum(diploid) 3	17.080
	CNS0095595	Whole white alabastrum(diploid) 2	22.494
	CNS0095596	Whole white alabastrum(diploid) 3	19.948
	CNS0095597	Whole white alabastrum(diploid) 4	19.763
	CNS0095598	Silvery flower (diploied) 1	9.863
	CNS0095599	Silvery flower (diploied) 2	15.144
	CNS0095600	Silvery flower (diploied) 3	3.841
	CNS0095601	Golden flower (diploid) 1	11.975
	CNS0095602	Golden flower (diploid) 2	8.137
	CNS0095603	Golden flower (diploid) 3	5.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.738
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.672
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.234
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.403
	CNS0095610	Silvery flower (tetraploid) 1	1.924
	CNS0095611	Silvery flower (tetraploid) 2	2.069
	CNS0095612	Silvery flower (tetraploid) 3	2.707
	CNS0095613	Golden flower (tetraploid) 1	1.059
	CNS0095614	Golden flower (tetraploid) 2	1.497
	CNS0095615	Golden flower (tetraploid) 3	0.573
CRA001975	CRR073297	Stem 1	33.957
	CRR073298	Stem 2	30.118
	CRR073299	Stem 3	29.532
	CRR073300	Leaf 1	44.586
	CRR073301	Leaf 2	47.978
	CRR073302	Leaf 3	39.493
	CRR073303	Juvenile bud 1	38.269
	CRR073304	Juvenile bud 2	39.241
	CRR073305	Juvenile bud 3	33.933
	CRR073306	Third green 1	1.743
	CRR073307	Third green 2	3.023
	CRR073308	Third green 3	2.760
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.290
	CRR073311	Second white 3	0.064
	CRR073312	Silver flowering 1	1.295
	CRR073313	Silver flowering 2	0.857
	CRR073314	Silver flowering 3	0.753
	CRR073315	Gold flowering 1	13.350
	CRR073316	Gold flowering 2	15.674
	CRR073317	Gold flowering 3	18.366
	CRR073318	Tawny withering 1	31.844
	CRR073319	Tawny withering 2	24.244
	CRR073320	Tawny withering 3	31.884