Gene detail

Detail information of GWHGAAZE026505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007011340.1	6.5503E-133	Superoxide dismutase [Theobroma cacao]
COG	YP_007269.1	7E-76	superoxide dismutase (Mn)
Swissprot	tr\|P11796\|SODM_NICPL	1E-132	Superoxide dismutase [Mn], mitochondrial (Precursor)
trEMBL	tr\|A0A061FS91\|A0A061FS91_THECC	2E-133	Superoxide dismutase {ECO:0000256\|RuleBase:RU000414}
TAIR10	AT3G10920.1	9E-98	manganese superoxide dismutase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5605496	5612400	+
GWHAAZE00000008	mRNA	5605496	5612400	+
GWHAAZE00000008	exon	5605496	5605751	+
GWHAAZE00000008	exon	5606830	5606876	+
GWHAAZE00000008	exon	5606971	5607096	+
GWHAAZE00000008	exon	5607212	5607268	+
GWHAAZE00000008	exon	5611385	5611462	+
GWHAAZE00000008	exon	5612308	5612400	+
GWHAAZE00000008	CDS	5605496	5605751	+
GWHAAZE00000008	CDS	5606830	5606876	+
GWHAAZE00000008	CDS	5606971	5607096	+
GWHAAZE00000008	CDS	5607212	5607268	+
GWHAAZE00000008	CDS	5611385	5611462	+
GWHAAZE00000008	CDS	5612308	5612400	+

Transcript Sequence
>GWHTAAZE026539 ATGGCTTTACGAACCCTCCTAGCTACCAGAAAAACCCTGTCTTCAGGTTTCCAGCAACTCCGCGGATTACAGACCACCTCCCTTCCCGATCTCCCTTATGACTATGGCGCTCTCGAGCCGGCAATTAATGGAGAGATCATGCAGATTCATCACCAGAAGCACCACCAGGCTTACGTCACCAACTACAACAAAGCTCTCGAGCAGCTCGATGCCGCCATCGCCAAGGGAGATGCTTCCGCCGTTGTCAAGTTGCAGAGCCATGTAAATCACTCAATTTTCTGGAAGAATCTTGCACCAGTTCATGAAGGAGGCGGTGAGCCCCCAAAGAGTTCTTTGGGCTGGGCCATTGATACACACTTCGGTTCCATGGAAACATTGGTAACAAAGATGAATGCAGAAGGTGCTGCTCTACAGGGATCTGGATGGGTGTGGCTTGGTGTGGACAAAGAGTTGAAAAGGCTTGTGGTTGAAACCACTGCAAATCAGGACCCACTTGTCACTAAAGGACCCAGTTTGGTTCCTCTGCTGGGCATAGATGTTTGGGAGCATGCATATTACTTGCAGTACAAGAATGTAAGACCAGATTACCTGAAGAACATATGGAAAGTGATTAACTGGAAGTATGCAAGTGAAGTTTATGCAAAAGAGTGCCCTTGA

Network for GWHGAAZE026505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00081.23	Sod_Fe_N	27	98	1.70E-23
PF02777.19	Sod_Fe_C	108	210	1.10E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04564	SOD2	MAPK signaling pathway - fly	map04013
		FoxO signaling pathway	map04068
		Peroxisome	map04146
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006801	biological_process	superoxide metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004784	molecular_function	superoxide dismutase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	211.734
	SRR3591706	second leaf	141.411
	SRR3591707	mature leaf	126.654
	SRR3591708	Shoot apex	200.907
	SRR3591709	Stem	194.446
	SRR3591710	White floral bud	187.330
	SRR3591711	White flower	304.509
	SRR3591712	Green floral bud	272.791
	SRR3591713	Yellow flower	319.914
SRP173429	SRR8316895	Juvenile bud stage	147.366
	SRR8316896	Juvenile bud stage	211.439
	SRR8316897	Juvenile bud stage	117.739
	SRR8316894	Third green stage	97.403
	SRR8316900	Third green stage	425.131
	SRR8316901	Third green stage	362.509
	SRR8316898	Complete white stage	157.936
	SRR8316899	Complete white stage	353.353
	SRR8316903	Complete white stage	207.154
	SRR8316902	Silver flowering stage	190.852
	SRR8316904	Silver flowering stage	202.568
	SRR8316905	Silver flowering stage	113.135
	SRR8316906	Gold flowering stage	387.039
	SRR8316907	Gold flowering stage	455.687
	SRR8316908	Gold flowering stage	463.285
SRP132670	SRR6706286	Control	428.686
	SRR6706287	Light intensity 50%	395.225
	SRR6706288	Light intensity 20%	447.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	215.798
	CNS0095593	Slightly white alabastrum(diploid) 2	260.779
	CNS0095594	Slightly white alabastrum(diploid) 3	207.344
	CNS0095595	Whole white alabastrum(diploid) 2	257.458
	CNS0095596	Whole white alabastrum(diploid) 3	271.982
	CNS0095597	Whole white alabastrum(diploid) 4	235.757
	CNS0095598	Silvery flower (diploied) 1	231.652
	CNS0095599	Silvery flower (diploied) 2	260.534
	CNS0095600	Silvery flower (diploied) 3	366.917
	CNS0095601	Golden flower (diploid) 1	218.898
	CNS0095602	Golden flower (diploid) 2	335.663
	CNS0095603	Golden flower (diploid) 3	336.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	303.930
	CNS0095605	Slightly white alabastrum(tetraploid) 2	275.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	358.274
	CNS0095607	Whole white alabastrum(tetraploid) 1	222.982
	CNS0095608	Whole white alabastrum(tetraploid) 2	254.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	365.939
	CNS0095610	Silvery flower (tetraploid) 1	515.098
	CNS0095611	Silvery flower (tetraploid) 2	561.996
	CNS0095612	Silvery flower (tetraploid) 3	481.773
	CNS0095613	Golden flower (tetraploid) 1	379.551
	CNS0095614	Golden flower (tetraploid) 2	446.522
	CNS0095615	Golden flower (tetraploid) 3	265.889
CRA001975	CRR073297	Stem 1	207.731
	CRR073298	Stem 2	233.696
	CRR073299	Stem 3	277.318
	CRR073300	Leaf 1	321.908
	CRR073301	Leaf 2	354.689
	CRR073302	Leaf 3	474.630
	CRR073303	Juvenile bud 1	556.192
	CRR073304	Juvenile bud 2	608.853
	CRR073305	Juvenile bud 3	474.344
	CRR073306	Third green 1	429.204
	CRR073307	Third green 2	413.441
	CRR073308	Third green 3	341.475
	CRR073309	Second white 1	578.468
	CRR073310	Second white 2	306.425
	CRR073311	Second white 3	238.648
	CRR073312	Silver flowering 1	290.422
	CRR073313	Silver flowering 2	389.644
	CRR073314	Silver flowering 3	276.273
	CRR073315	Gold flowering 1	193.292
	CRR073316	Gold flowering 2	170.538
	CRR073317	Gold flowering 3	194.727
	CRR073318	Tawny withering 1	321.893
	CRR073319	Tawny withering 2	265.992
	CRR073320	Tawny withering 3	257.541