Gene detail

Detail information of GWHGAAZE026508

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009363810.1	0	PREDICTED: alpha-galactosidase-like [Pyrus x bretschneideri]
COG	YP_004960271.1	2E-117	alpha-galactosidase
Swissprot	tr\|P14749\|AGAL_CYATE	2E-168	Alpha-galactosidase (Precursor)
trEMBL	tr\|M5XCJ0\|M5XCJ0_PRUPE	0	Alpha-galactosidase {ECO:0000256\|RuleBase:RU361168}
TAIR10	AT3G56310.1	5E-179	Melibiase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5637275	5642740	-
GWHAAZE00000008	mRNA	5637275	5642740	-
GWHAAZE00000008	exon	5637275	5637385	-
GWHAAZE00000008	exon	5637560	5637700	-
GWHAAZE00000008	exon	5638505	5638563	-
GWHAAZE00000008	exon	5638914	5638988	-
GWHAAZE00000008	exon	5639339	5639425	-
GWHAAZE00000008	exon	5639532	5639596	-
GWHAAZE00000008	exon	5640359	5640442	-
GWHAAZE00000008	exon	5640536	5640601	-
GWHAAZE00000008	exon	5640688	5640746	-
GWHAAZE00000008	exon	5641086	5641158	-
GWHAAZE00000008	exon	5641418	5641521	-
GWHAAZE00000008	exon	5641754	5641788	-
GWHAAZE00000008	exon	5641870	5641926	-
GWHAAZE00000008	exon	5642343	5642401	-
GWHAAZE00000008	exon	5642550	5642740	-
GWHAAZE00000008	CDS	5642550	5642740	-
GWHAAZE00000008	CDS	5642343	5642401	-
GWHAAZE00000008	CDS	5641870	5641926	-
GWHAAZE00000008	CDS	5641754	5641788	-
GWHAAZE00000008	CDS	5641418	5641521	-
GWHAAZE00000008	CDS	5641086	5641158	-
GWHAAZE00000008	CDS	5640688	5640746	-
GWHAAZE00000008	CDS	5640536	5640601	-
GWHAAZE00000008	CDS	5640359	5640442	-
GWHAAZE00000008	CDS	5639532	5639596	-
GWHAAZE00000008	CDS	5639339	5639425	-
GWHAAZE00000008	CDS	5638914	5638988	-
GWHAAZE00000008	CDS	5638505	5638563	-
GWHAAZE00000008	CDS	5637560	5637700	-
GWHAAZE00000008	CDS	5637275	5637385	-

Transcript Sequence
>GWHTAAZE026542 ATGGCGTCTATAAATATAGCAGCAGCAGCGATCTTGTATATGTCGACTCTCTCACTCGTACTCGCAGTTCGAGTTGTACCAAATCCCCCTCTCTTGATCAATCAAAAGAAGCCATATTCAGACATATTCGATACTTCAATGTACGGTTTACTTCAACTCAACAATGGCTTAGCTCAAACTCCTCAGATGGGATGGAATAGCTGGAATTTCTTTGCCTGCGATATTAATGAAACTGTTATCAAGGAAACAGCTGATGCACTTGTCTCCACTGGCTTGGCTGAGAGGGGATATATTTATGTTAATATAGATGATTGCTGGTCTTCTGCAAAGCGAAATTCAAAGGGTTATTTAGTCCATGATCCAGAAACTTTTCCATCAGGAATTAAGGCTCTTGCTGATTATGTACATGGGAAGGGCCTCAAACTTGGTATCTACTCTGATGCTGGGGTTTTTACATGTCAAGTTCGACCTGGATCGCTGTTCCATGAAAAGGTTGATGCGGAGCTATTTGCTTCTTGGGACATAGATTACTTGAAGTATGATAACTGTTACAATCTAGGCATCAAACCAAAGGAGAGATACCCCCCAATGCGTGATGCTCTAAATGTGACTGGACGTACAATTTTTTATTCGCTTTGTGAATGGGGAGTTGATGACCCTGCTTTATGGGCAGGCCAAGTTGGAAATAGTTGGCGAACAACAGATGACATCAATGATTCATGGGCAAGCATGACTTCTATTGCCGATCTGAACAACAAGTGGGCAGCCTATGCGGGACCTGGTGGCTGGAATGATCCGGATATGTTAGAAGTTGGCAATGGAGGCATGACTTACCAGGAATACCGAGCTCACTTTAGCATTTGGGCTTTGATGAAGGCACGTTGTGATGTCAGAAACATGACTGCAGAGACATTCGAAATTCTAAGCAATGAGGAGGTCATTGCTATAAACCAAGATCCACTTGGGGTACAAGGAAGGAAAGTCAATGAAACAGGAACAGATGGTTGCCTCCAGGTGTGGGCTGGTCCTTTATCTGGAAATCGTGTTGTGGTTGCCCTGTGGAATCGGTGTTCAAAAGCTGCAGCAATAAAAGCAGCATGGGGTGCACTTGGACTTGAATCCTCTGTCAAAGTATCCGTCAGAGATTTGTGGAAGCACCATGATGTAGTCGGAGATGTTGTGGCATCATTCAGTGCTCGAGTTGATGCTCACAGCTGTGAGTTGTACATTTTCACTCCAAAACTAGCATCTCGAGCGGAAATCTAA

Network for GWHGAAZE026508

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16499.6	Melibiase_2	60	319	2.40E-76
PF17801.2	Melibiase_C	334	410	4.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07407	E3.2.1.22B, galA, rafA	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Glycerolipid metabolism	map00561
		Sphingolipid metabolism	map00600
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.046
	SRR3591706	second leaf	12.839
	SRR3591707	mature leaf	12.897
	SRR3591708	Shoot apex	11.856
	SRR3591709	Stem	12.967
	SRR3591710	White floral bud	19.773
	SRR3591711	White flower	20.953
	SRR3591712	Green floral bud	21.091
	SRR3591713	Yellow flower	12.339
SRP173429	SRR8316895	Juvenile bud stage	11.366
	SRR8316896	Juvenile bud stage	14.994
	SRR8316897	Juvenile bud stage	7.091
	SRR8316894	Third green stage	7.878
	SRR8316900	Third green stage	26.776
	SRR8316901	Third green stage	22.413
	SRR8316898	Complete white stage	7.706
	SRR8316899	Complete white stage	27.583
	SRR8316903	Complete white stage	13.323
	SRR8316902	Silver flowering stage	7.109
	SRR8316904	Silver flowering stage	14.065
	SRR8316905	Silver flowering stage	7.504
	SRR8316906	Gold flowering stage	14.793
	SRR8316907	Gold flowering stage	17.060
	SRR8316908	Gold flowering stage	14.327
SRP132670	SRR6706286	Control	21.902
	SRR6706287	Light intensity 50%	22.845
	SRR6706288	Light intensity 20%	28.218
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.067
	CNS0095593	Slightly white alabastrum(diploid) 2	18.945
	CNS0095594	Slightly white alabastrum(diploid) 3	16.815
	CNS0095595	Whole white alabastrum(diploid) 2	15.233
	CNS0095596	Whole white alabastrum(diploid) 3	17.820
	CNS0095597	Whole white alabastrum(diploid) 4	18.209
	CNS0095598	Silvery flower (diploied) 1	21.840
	CNS0095599	Silvery flower (diploied) 2	18.280
	CNS0095600	Silvery flower (diploied) 3	24.474
	CNS0095601	Golden flower (diploid) 1	15.118
	CNS0095602	Golden flower (diploid) 2	21.727
	CNS0095603	Golden flower (diploid) 3	18.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.722
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.459
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.691
	CNS0095610	Silvery flower (tetraploid) 1	26.066
	CNS0095611	Silvery flower (tetraploid) 2	29.090
	CNS0095612	Silvery flower (tetraploid) 3	32.534
	CNS0095613	Golden flower (tetraploid) 1	13.086
	CNS0095614	Golden flower (tetraploid) 2	18.955
	CNS0095615	Golden flower (tetraploid) 3	15.891
CRA001975	CRR073297	Stem 1	23.484
	CRR073298	Stem 2	19.324
	CRR073299	Stem 3	24.497
	CRR073300	Leaf 1	27.424
	CRR073301	Leaf 2	24.773
	CRR073302	Leaf 3	31.189
	CRR073303	Juvenile bud 1	32.648
	CRR073304	Juvenile bud 2	29.098
	CRR073305	Juvenile bud 3	34.436
	CRR073306	Third green 1	15.069
	CRR073307	Third green 2	18.863
	CRR073308	Third green 3	15.198
	CRR073309	Second white 1	14.906
	CRR073310	Second white 2	9.549
	CRR073311	Second white 3	8.799
	CRR073312	Silver flowering 1	5.865
	CRR073313	Silver flowering 2	5.126
	CRR073314	Silver flowering 3	7.432
	CRR073315	Gold flowering 1	14.429
	CRR073316	Gold flowering 2	23.881
	CRR073317	Gold flowering 3	14.187
	CRR073318	Tawny withering 1	20.918
	CRR073319	Tawny withering 2	20.978
	CRR073320	Tawny withering 3	20.650