Gene detail

Detail information of GWHGAAZE026522

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU35231.1	1.3969E-178	hypothetical protein MIMGU_mgv1a011203mg [Erythranthe guttata]
Swissprot	tr\|Q9M5P8\|SNAA_SOLTU	6E-150	Alpha-soluble NSF attachment protein
trEMBL	tr\|A0A022R4P1\|A0A022R4P1_ERYGU	5E-179	Uncharacterized protein {ECO:0000313\|EMBL:EYU35231.1}
TAIR10	AT3G56190.1	2E-93	alpha-soluble NSF attachment protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	5860127	5867006	+
GWHAAZE00000008	mRNA	5860127	5867006	+
GWHAAZE00000008	exon	5860127	5860271	+
GWHAAZE00000008	exon	5861664	5861713	+
GWHAAZE00000008	exon	5861845	5861887	+
GWHAAZE00000008	exon	5863118	5863197	+
GWHAAZE00000008	exon	5863345	5863496	+
GWHAAZE00000008	exon	5864531	5864690	+
GWHAAZE00000008	exon	5864769	5864816	+
GWHAAZE00000008	exon	5865461	5865541	+
GWHAAZE00000008	exon	5866926	5867006	+
GWHAAZE00000008	CDS	5860127	5860271	+
GWHAAZE00000008	CDS	5861664	5861713	+
GWHAAZE00000008	CDS	5861845	5861887	+
GWHAAZE00000008	CDS	5863118	5863197	+
GWHAAZE00000008	CDS	5863345	5863496	+
GWHAAZE00000008	CDS	5864531	5864690	+
GWHAAZE00000008	CDS	5864769	5864816	+
GWHAAZE00000008	CDS	5865461	5865541	+
GWHAAZE00000008	CDS	5866926	5867006	+

Transcript Sequence
>GWHTAAZE026556 ATGGCGGATCAGATAGCCAAAGGGGAAGATTTTGAGAAGAAAGCAGAGAAGAAGCTTGGCGGCTGGGGCCTCTTCGGTTCTAAATACGAAGACGCCGCTGATTTGTTCGAGAAATCTGCCAATTCCTTCAAACTCGCCAAATCCTGGGACCAAGCTGGAGCCATATATGTCAAGTTGGCAAACTGTCACTTAAAGTTGGATAGCAAACATGAAGCTGCTAATGCTTATGCTGATGCTGAATGCATATCTTGCCTAGAGCAATCAGTAAATCTCTTCTTGGAGATCGGGAGGCTCAATATGTCTGCAAGATACTACAAGGAAATTGCTGAAATATGTGAGCAAGATCAAAATTTGGAGCAGGCTATTTATTACTATGAAAAAGCTGCTGATCTTTTTCAAAGTGAAGATGTAACAACTTCTGCAAATCAGTGCAGGCAGAAAATTGCTCAATTTGCTGCTCAACTGGAACATTATCAGAAAGCGATTGACATTTATGAGGATATAGCACGACAGTCCCTCAACAATCACTTACTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTTGTTGCTATTACCAATGCATTGGAGAAATATCAGGAATTGGATCCTACTTTTTCAGGTTCTCGTGAATACAGATTGTTAGCGGATTTGGCCGCTGCGGTTGATGAAGAAGATATTGCAAAGTTTACCGATGCTATCAAGGAATTTGATAGCATGACCCAGCTGGATGCATGGAGGACGACCCTTCTGTTGAGAGTGAAGGAAGCACTCAAGGCCAAAGAGTTGGAGGAGGACGATCTTACTTAA

Network for GWHGAAZE026522

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14938.7	SNAP	7	268	2.20E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15296	NAPA, SNAPA, SEC17	Autophagy - yeast	map04138
K15296	NAPA, SNAPA, SEC17	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.618
	SRR3591706	second leaf	28.749
	SRR3591707	mature leaf	27.211
	SRR3591708	Shoot apex	39.548
	SRR3591709	Stem	55.080
	SRR3591710	White floral bud	55.589
	SRR3591711	White flower	57.140
	SRR3591712	Green floral bud	62.055
	SRR3591713	Yellow flower	49.952
SRP173429	SRR8316895	Juvenile bud stage	59.876
	SRR8316896	Juvenile bud stage	79.787
	SRR8316897	Juvenile bud stage	13.273
	SRR8316894	Third green stage	29.999
	SRR8316900	Third green stage	55.493
	SRR8316901	Third green stage	61.864
	SRR8316898	Complete white stage	32.814
	SRR8316899	Complete white stage	83.813
	SRR8316903	Complete white stage	65.497
	SRR8316902	Silver flowering stage	30.435
	SRR8316904	Silver flowering stage	43.697
	SRR8316905	Silver flowering stage	19.451
	SRR8316906	Gold flowering stage	46.947
	SRR8316907	Gold flowering stage	50.232
	SRR8316908	Gold flowering stage	35.040
SRP132670	SRR6706286	Control	27.352
	SRR6706287	Light intensity 50%	35.766
	SRR6706288	Light intensity 20%	39.281
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.043
	CNS0095593	Slightly white alabastrum(diploid) 2	61.960
	CNS0095594	Slightly white alabastrum(diploid) 3	69.910
	CNS0095595	Whole white alabastrum(diploid) 2	54.069
	CNS0095596	Whole white alabastrum(diploid) 3	48.610
	CNS0095597	Whole white alabastrum(diploid) 4	56.546
	CNS0095598	Silvery flower (diploied) 1	65.198
	CNS0095599	Silvery flower (diploied) 2	48.011
	CNS0095600	Silvery flower (diploied) 3	23.788
	CNS0095601	Golden flower (diploid) 1	56.302
	CNS0095602	Golden flower (diploid) 2	27.906
	CNS0095603	Golden flower (diploid) 3	28.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.832
	CNS0095610	Silvery flower (tetraploid) 1	51.052
	CNS0095611	Silvery flower (tetraploid) 2	43.603
	CNS0095612	Silvery flower (tetraploid) 3	48.084
	CNS0095613	Golden flower (tetraploid) 1	37.468
	CNS0095614	Golden flower (tetraploid) 2	40.846
	CNS0095615	Golden flower (tetraploid) 3	28.188
CRA001975	CRR073297	Stem 1	48.790
	CRR073298	Stem 2	39.315
	CRR073299	Stem 3	12.030
	CRR073300	Leaf 1	41.608
	CRR073301	Leaf 2	47.477
	CRR073302	Leaf 3	10.827
	CRR073303	Juvenile bud 1	12.909
	CRR073304	Juvenile bud 2	8.218
	CRR073305	Juvenile bud 3	13.648
	CRR073306	Third green 1	8.611
	CRR073307	Third green 2	8.658
	CRR073308	Third green 3	6.703
	CRR073309	Second white 1	11.019
	CRR073310	Second white 2	6.849
	CRR073311	Second white 3	4.937
	CRR073312	Silver flowering 1	5.667
	CRR073313	Silver flowering 2	5.065
	CRR073314	Silver flowering 3	4.483
	CRR073315	Gold flowering 1	7.824
	CRR073316	Gold flowering 2	9.942
	CRR073317	Gold flowering 3	4.752
	CRR073318	Tawny withering 1	21.426
	CRR073319	Tawny withering 2	29.112
	CRR073320	Tawny withering 3	25.551