Detail information of GWHGAAZE026553


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011076672.13.31227E-32PREDICTED: RING-H2 finger protein ATL66 [Sesamum indicum]
Swissprottr|Q9SRM0|ATL66_ARATH4E-20RING-H2 finger protein ATL66
trEMBLtr|A0A067FNF6|A0A067FNF6_CITSI2E-30Uncharacterized protein {ECO:0000313|EMBL:KDO68918.1}
TAIR10AT3G11110.11E-16RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene64214726422081+
GWHAAZE00000008mRNA64214726422081+
GWHAAZE00000008exon64214726421550+
GWHAAZE00000008exon64216336422081+
GWHAAZE00000008CDS64214726421550+
GWHAAZE00000008CDS64216336422081+
Transcript Sequence

Network for GWHGAAZE026553

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21231666.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.478
SRR3591706second leaf2.672
SRR3591707mature leaf4.264
SRR3591708Shoot apex3.855
SRR3591709Stem2.252
SRR3591710White floral bud0.663
SRR3591711White flower0.887
SRR3591712Green floral bud1.647
SRR3591713Yellow flower0.450
SRP173429 SRR8316895Juvenile bud stage 2.059
SRR8316896Juvenile bud stage 3.085
SRR8316897Juvenile bud stage 0.273
SRR8316894Third green stage 0.861
SRR8316900Third green stage 2.063
SRR8316901Third green stage 2.912
SRR8316898Complete white stage 0.999
SRR8316899Complete white stage 1.435
SRR8316903Complete white stage 1.758
SRR8316902Silver flowering stage0.345
SRR8316904Silver flowering stage0.392
SRR8316905Silver flowering stage0.190
SRR8316906Gold flowering stage 0.845
SRR8316907Gold flowering stage 0.312
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.459
SRR6706287Light intensity 50%2.705
SRR6706288Light intensity 20%3.012
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.087
CNS0095593Slightly white alabastrum(diploid) 26.912
CNS0095594Slightly white alabastrum(diploid) 34.989
CNS0095595Whole white alabastrum(diploid) 22.592
CNS0095596Whole white alabastrum(diploid) 34.251
CNS0095597Whole white alabastrum(diploid) 43.038
CNS0095598Silvery flower (diploied) 12.726
CNS0095599Silvery flower (diploied) 20.963
CNS0095600Silvery flower (diploied) 31.015
CNS0095601Golden flower (diploid) 14.422
CNS0095602Golden flower (diploid) 22.080
CNS0095603Golden flower (diploid) 31.373
CNS0095604Slightly white alabastrum(tetraploid) 13.235
CNS0095605Slightly white alabastrum(tetraploid) 21.909
CNS0095606Slightly white alabastrum(tetraploid) 32.144
CNS0095607Whole white alabastrum(tetraploid) 11.108
CNS0095608Whole white alabastrum(tetraploid) 20.879
CNS0095609Whole white alabastrum(tetraploid) 33.829
CNS0095610Silvery flower (tetraploid) 10.915
CNS0095611Silvery flower (tetraploid) 21.982
CNS0095612Silvery flower (tetraploid) 30.704
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.262
CNS0095615Golden flower (tetraploid) 30.076
CRA001975CRR073297Stem 14.157
CRR073298Stem 23.868
CRR073299Stem 33.614
CRR073300Leaf 13.496
CRR073301Leaf 23.704
CRR073302Leaf 32.165
CRR073303Juvenile bud 13.084
CRR073304Juvenile bud 22.037
CRR073305Juvenile bud 32.159
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.942
CRR073316Gold flowering 20.521
CRR073317Gold flowering 30.733
CRR073318Tawny withering 13.365
CRR073319Tawny withering 20.554
CRR073320Tawny withering 35.471